Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL1P09341 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC15.52■□□□□ 0.08
CXCL1P09341 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.08
CXCL1P09341 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC15.52■□□□□ 0.08
CXCL1P09341 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC15.52■□□□□ 0.08
CXCL1P09341 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.08
CXCL1P09341 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CXCL1P09341 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL1P09341 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CXCL1P09341 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CXCL1P09341 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.07
CXCL1P09341 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CXCL1P09341 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CXCL1P09341 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
CXCL1P09341 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CXCL1P09341 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC15.52■□□□□ 0.07
CXCL1P09341 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CXCL1P09341 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC15.51■□□□□ 0.07
CXCL1P09341 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CXCL1P09341 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC15.51■□□□□ 0.07
CXCL1P09341 NOC2LP2-201ENST00000407594 1944 ntBASIC15.51■□□□□ 0.07
CXCL1P09341 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC15.51■□□□□ 0.07
CXCL1P09341 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 AC006455.2-201ENST00000429931 906 ntBASIC15.51■□□□□ 0.07
CXCL1P09341 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.51■□□□□ 0.07
CXCL1P09341 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
CXCL1P09341 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC15.51■□□□□ 0.07
CXCL1P09341 AC092720.2-201ENST00000602388 1665 ntBASIC15.51■□□□□ 0.07
CXCL1P09341 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CXCL1P09341 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CXCL1P09341 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL1P09341 AC068880.1-201ENST00000507289 2297 ntBASIC15.5■□□□□ 0.07
CXCL1P09341 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CXCL1P09341 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL1P09341 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CXCL1P09341 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
CXCL1P09341 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL1P09341 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL1P09341 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL1P09341 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC15.5■□□□□ 0.07
CXCL1P09341 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC15.5■□□□□ 0.07
CXCL1P09341 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC15.5■□□□□ 0.07
CXCL1P09341 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC15.5■□□□□ 0.07
CXCL1P09341 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL1P09341 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CXCL1P09341 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
CXCL1P09341 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
CXCL1P09341 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC15.5■□□□□ 0.07
CXCL1P09341 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL1P09341 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL1P09341 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CXCL1P09341 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC15.49■□□□□ 0.07
CXCL1P09341 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC15.49■□□□□ 0.07
CXCL1P09341 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CXCL1P09341 TSPY9P-201ENST00000440215 945 ntBASIC15.49■□□□□ 0.07
CXCL1P09341 TSPY11P-201ENST00000442607 1045 ntBASIC15.49■□□□□ 0.07
CXCL1P09341 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC15.49■□□□□ 0.07
CXCL1P09341 AC092171.4-201ENST00000609130 632 ntBASIC15.49■□□□□ 0.07
CXCL1P09341 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC15.49■□□□□ 0.07
CXCL1P09341 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.49■□□□□ 0.07
CXCL1P09341 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.49■□□□□ 0.07
CXCL1P09341 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.49■□□□□ 0.07
CXCL1P09341 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CXCL1P09341 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CXCL1P09341 LINC01465-201ENST00000408887 1940 ntBASIC15.49■□□□□ 0.07
CXCL1P09341 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CXCL1P09341 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL1P09341 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL1P09341 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
CXCL1P09341 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL1P09341 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL1P09341 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CXCL1P09341 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
CXCL1P09341 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CXCL1P09341 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL1P09341 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC15.48■□□□□ 0.07
CXCL1P09341 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC15.48■□□□□ 0.07
CXCL1P09341 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CXCL1P09341 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CXCL1P09341 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms