Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.48■□□□□ 0.87
HOXC11O43248 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
HOXC11O43248 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC11O43248 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC11O43248 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HOXC11O43248 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC11O43248 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
HOXC11O43248 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.47■□□□□ 0.87
HOXC11O43248 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.47■□□□□ 0.87
HOXC11O43248 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.47■□□□□ 0.87
HOXC11O43248 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC11O43248 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC11O43248 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
HOXC11O43248 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.47■□□□□ 0.87
HOXC11O43248 AL353807.1-201ENST00000427475 662 ntBASIC20.47■□□□□ 0.87
HOXC11O43248 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.47■□□□□ 0.87
HOXC11O43248 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.47■□□□□ 0.87
HOXC11O43248 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.47■□□□□ 0.87
HOXC11O43248 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
HOXC11O43248 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
HOXC11O43248 FP700111.2-201ENST00000619190 1892 ntBASIC20.47■□□□□ 0.87
HOXC11O43248 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.47■□□□□ 0.87
HOXC11O43248 HTR7P1-201ENST00000538670 1336 ntBASIC20.47■□□□□ 0.87
HOXC11O43248 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HOXC11O43248 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC11O43248 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.46■□□□□ 0.87
HOXC11O43248 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
HOXC11O43248 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.46■□□□□ 0.87
HOXC11O43248 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC11O43248 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
HOXC11O43248 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.46■□□□□ 0.87
HOXC11O43248 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC11O43248 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC11O43248 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
HOXC11O43248 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
HOXC11O43248 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC11O43248 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.46■□□□□ 0.87
HOXC11O43248 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.46■□□□□ 0.87
HOXC11O43248 BX088651.1-201ENST00000540551 451 ntBASIC20.46■□□□□ 0.87
HOXC11O43248 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.46■□□□□ 0.87
HOXC11O43248 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC11O43248 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.46■□□□□ 0.87
HOXC11O43248 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.46■□□□□ 0.87
HOXC11O43248 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.46■□□□□ 0.87
HOXC11O43248 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC11O43248 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.46■□□□□ 0.87
HOXC11O43248 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC11O43248 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC11O43248 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC11O43248 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC11O43248 AC005229.4-201ENST00000610085 2198 ntBASIC20.45■□□□□ 0.86
HOXC11O43248 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC11O43248 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC11O43248 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC11O43248 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
HOXC11O43248 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.45■□□□□ 0.86
HOXC11O43248 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC11O43248 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.45■□□□□ 0.86
HOXC11O43248 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.45■□□□□ 0.86
HOXC11O43248 AF186192.3-201ENST00000583427 947 ntBASIC20.45■□□□□ 0.86
HOXC11O43248 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC11O43248 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC11O43248 AC026310.3-201ENST00000625186 2373 ntBASIC20.45■□□□□ 0.86
HOXC11O43248 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC11O43248 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.45■□□□□ 0.86
HOXC11O43248 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC11O43248 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.44■□□□□ 0.86
HOXC11O43248 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.44■□□□□ 0.86
HOXC11O43248 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC11O43248 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.44■□□□□ 0.86
HOXC11O43248 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.44■□□□□ 0.86
HOXC11O43248 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
HOXC11O43248 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.44■□□□□ 0.86
HOXC11O43248 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.44■□□□□ 0.86
HOXC11O43248 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.44■□□□□ 0.86
HOXC11O43248 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.44■□□□□ 0.86
HOXC11O43248 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC11O43248 AC004264.1-201ENST00000608354 794 ntBASIC20.44■□□□□ 0.86
HOXC11O43248 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.44■□□□□ 0.86
HOXC11O43248 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
HOXC11O43248 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
HOXC11O43248 REXO1L12P-201ENST00000622156 912 ntBASIC20.44■□□□□ 0.86
HOXC11O43248 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC11O43248 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.44■□□□□ 0.86
HOXC11O43248 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC11O43248 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC11O43248 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC11O43248 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC11O43248 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC11O43248 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC11O43248 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC11O43248 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC11O43248 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC11O43248 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
HOXC11O43248 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
HOXC11O43248 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.43■□□□□ 0.86
HOXC11O43248 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC11O43248 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC11O43248 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.43■□□□□ 0.86
HOXC11O43248 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms