Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 AC140113.3-201ENST00000605663 199 ntBASIC15.7■□□□□ 0.1
COL6A5A8TX70 AL023803.3-201ENST00000615559 522 ntBASIC15.7■□□□□ 0.1
COL6A5A8TX70 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.7■□□□□ 0.1
COL6A5A8TX70 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 ATP5G2P1-201ENST00000433580 426 ntBASIC15.69■□□□□ 0.1
COL6A5A8TX70 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 AL512604.3-201ENST00000569583 964 ntBASIC15.69■□□□□ 0.1
COL6A5A8TX70 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 ETFA-216ENST00000560726 942 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 AC068473.5-201ENST00000616428 2072 ntBASIC15.69■□□□□ 0.1
COL6A5A8TX70 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC15.69■□□□□ 0.1
COL6A5A8TX70 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
COL6A5A8TX70 AC092338.2-201ENST00000568827 1415 ntBASIC15.68■□□□□ 0.1
COL6A5A8TX70 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.68■□□□□ 0.1
COL6A5A8TX70 GXYLT1P6-201ENST00000456472 1187 ntBASIC15.68■□□□□ 0.1
COL6A5A8TX70 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A5A8TX70 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
COL6A5A8TX70 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.68■□□□□ 0.1
COL6A5A8TX70 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
COL6A5A8TX70 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC15.68■□□□□ 0.1
COL6A5A8TX70 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A5A8TX70 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.68■□□□□ 0.1
COL6A5A8TX70 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL6A5A8TX70 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL6A5A8TX70 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A5A8TX70 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A5A8TX70 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 EMBP1-201ENST00000458200 901 ntBASIC15.67■□□□□ 0.1
COL6A5A8TX70 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 PRSS44-201ENST00000515154 1146 ntBASIC15.67■□□□□ 0.1
COL6A5A8TX70 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 AC116562.4-202ENST00000641738 218 ntBASIC15.67■□□□□ 0.1
COL6A5A8TX70 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A5A8TX70 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A5A8TX70 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A5A8TX70 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A5A8TX70 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL6A5A8TX70 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 IFNL4P1-201ENST00000607083 540 ntBASIC15.67■□□□□ 0.1
COL6A5A8TX70 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC15.67■□□□□ 0.1
COL6A5A8TX70 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A5A8TX70 SLC25A1P2-201ENST00000430693 912 ntBASIC15.66■□□□□ 0.1
COL6A5A8TX70 FDX2-206ENST00000492239 773 ntTSL 2 BASIC15.66■□□□□ 0.1
COL6A5A8TX70 AC141257.4-201ENST00000634557 245 ntBASIC15.66■□□□□ 0.1
COL6A5A8TX70 AC136944.6-201ENST00000634818 245 ntBASIC15.66■□□□□ 0.1
COL6A5A8TX70 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A5A8TX70 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC15.66■□□□□ 0.1
COL6A5A8TX70 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A5A8TX70 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A5A8TX70 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
COL6A5A8TX70 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.66■□□□□ 0.1
COL6A5A8TX70 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.66■□□□□ 0.1
COL6A5A8TX70 AC023632.3-201ENST00000521633 145 ntBASIC15.66■□□□□ 0.1
COL6A5A8TX70 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.66■□□□□ 0.1
COL6A5A8TX70 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.66■□□□□ 0.1
COL6A5A8TX70 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.66■□□□□ 0.1
COL6A5A8TX70 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A5A8TX70 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL6A5A8TX70 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms