Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
MSX1P28360 FHAD1-206ENST00000375998 4355 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
MSX1P28360 OLFM5P-201ENST00000411807 1478 ntBASIC8.19□□□□□ -1.1
MSX1P28360 API5P1-201ENST00000424316 1510 ntBASIC8.19□□□□□ -1.1
MSX1P28360 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC8.19□□□□□ -1.1
MSX1P28360 NECAP1-201ENST00000339754 2593 ntAPPRIS P2 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 AL008721.2-201ENST00000609475 3754 ntBASIC8.18□□□□□ -1.1
MSX1P28360 CCT5-213ENST00000515390 1728 ntTSL 2 BASIC8.18□□□□□ -1.1
MSX1P28360 DROSHA-220ENST00000513349 4681 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 TMPRSS4-220ENST00000618855 3531 ntAPPRIS P3 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 SYNPR-212ENST00000479198 2436 ntTSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 DAZL-202ENST00000399444 3050 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 SH3YL1-202ENST00000402632 3151 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 RNFT1P3-201ENST00000340898 1052 ntBASIC8.18□□□□□ -1.1
MSX1P28360 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 Y_RNA.408-201ENST00000383987 102 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AC136624.1-201ENST00000400791 413 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AL358781.2-201ENST00000415423 473 ntTSL 3 BASIC8.18□□□□□ -1.1
MSX1P28360 AC004830.1-201ENST00000420449 285 ntTSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 FABP5P1-201ENST00000423401 411 ntBASIC8.18□□□□□ -1.1
MSX1P28360 ATP13A4-AS1-201ENST00000426459 795 ntTSL 3 BASIC8.18□□□□□ -1.1
MSX1P28360 BX119917.1-201ENST00000432517 502 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC8.18□□□□□ -1.1
MSX1P28360 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC8.18□□□□□ -1.1
MSX1P28360 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC8.18□□□□□ -1.1
MSX1P28360 LINC01985-201ENST00000450746 436 ntTSL 3 BASIC8.18□□□□□ -1.1
MSX1P28360 AURKAPS1-201ENST00000451805 1212 ntBASIC8.18□□□□□ -1.1
MSX1P28360 RN7SL370P-201ENST00000470869 295 ntBASIC8.18□□□□□ -1.1
MSX1P28360 TRBV8-1-201ENST00000481590 279 ntBASIC8.18□□□□□ -1.1
MSX1P28360 RPL19P13-201ENST00000483119 583 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AF250324.1-204ENST00000501825 841 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 OR5H5P-201ENST00000503164 928 ntBASIC8.18□□□□□ -1.1
MSX1P28360 LINC01411-202ENST00000506862 744 ntTSL 3 BASIC8.18□□□□□ -1.1
MSX1P28360 IGHVII-26-2-201ENST00000518751 325 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC8.18□□□□□ -1.1
MSX1P28360 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC8.18□□□□□ -1.1
MSX1P28360 OR1D4-201ENST00000525719 939 ntBASIC8.18□□□□□ -1.1
MSX1P28360 OR8Q1P-201ENST00000526467 655 ntBASIC8.18□□□□□ -1.1
MSX1P28360 ZNF123P-201ENST00000531501 1196 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AC156455.1-202ENST00000540968 587 ntTSL 4 BASIC8.18□□□□□ -1.1
MSX1P28360 CACNA1C-AS3-201ENST00000543559 444 ntTSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC8.18□□□□□ -1.1
MSX1P28360 OR1D5-201ENST00000575751 939 ntAPPRIS P1 BASIC8.18□□□□□ -1.1
MSX1P28360 AL157931.1-201ENST00000575845 585 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 C17orf80-208ENST00000582793 531 ntTSL 2 BASIC8.18□□□□□ -1.1
MSX1P28360 LINC01764-201ENST00000587970 380 ntTSL 4 BASIC8.18□□□□□ -1.1
MSX1P28360 AL121985.1-203ENST00000588034 556 ntTSL 4 BASIC8.18□□□□□ -1.1
MSX1P28360 RNF157-207ENST00000592271 755 ntTSL 2 BASIC8.18□□□□□ -1.1
MSX1P28360 AL356986.1-201ENST00000604085 341 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AC138932.5-201ENST00000617759 563 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AC005840.5-201ENST00000619166 599 ntBASIC8.18□□□□□ -1.1
MSX1P28360 MIR7113-201ENST00000621222 59 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AL353608.4-201ENST00000624487 1188 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AC016717.3-201ENST00000624730 554 ntBASIC8.18□□□□□ -1.1
MSX1P28360 OR5AK4P-201ENST00000635912 903 ntBASIC8.18□□□□□ -1.1
MSX1P28360 AC009122.1-201ENST00000640559 1218 ntAPPRIS P1 TSL 3 BASIC8.18□□□□□ -1.1
MSX1P28360 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC8.18□□□□□ -1.1
MSX1P28360 NFIA-206ENST00000371191 1916 ntTSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 RAB3IP-218ENST00000553099 2674 ntTSL 2 BASIC8.18□□□□□ -1.1
MSX1P28360 TRIM52-205ENST00000611618 3466 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 CTNNA2-209ENST00000466387 4349 ntAPPRIS P1 TSL 2 BASIC8.18□□□□□ -1.1
MSX1P28360 SMC1B-202ENST00000404354 3636 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 SNX20-203ENST00000423026 2156 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC8.18□□□□□ -1.1
MSX1P28360 ZNF502-204ENST00000449836 3173 ntAPPRIS P1 TSL 3 BASIC8.18□□□□□ -1.1
MSX1P28360 ATP6V0D2-201ENST00000285393 2446 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 FGG-205ENST00000407946 1636 ntTSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 MYO10-201ENST00000274203 11456 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 CLUHP3-206ENST00000562354 4117 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 CNDP1-203ENST00000582365 4111 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 ZNF252P-208ENST00000592792 2485 ntBASIC8.18□□□□□ -1.1
MSX1P28360 PCDH15-229ENST00000616114 5846 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 HNRNPC-222ENST00000555914 1658 ntAPPRIS ALT1 TSL 5 BASIC8.18□□□□□ -1.1
MSX1P28360 SP140L-201ENST00000243810 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC8.18□□□□□ -1.1
MSX1P28360 EYA1-204ENST00000388741 3404 ntTSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 BACE1-202ENST00000392937 5155 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 PIGP-202ENST00000360525 6998 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 MLH1-216ENST00000458205 2608 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 ADGRE1-204ENST00000381407 2687 ntTSL 2 BASIC8.17□□□□□ -1.1
MSX1P28360 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 OSBPL3-202ENST00000396429 2707 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 SLIT2-203ENST00000503837 4752 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 ZNF90P1-201ENST00000480493 1951 ntBASIC8.17□□□□□ -1.1
MSX1P28360 POLR2D-201ENST00000272645 5042 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 RNF185-202ENST00000326132 3171 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 AC124804.1-202ENST00000583712 4315 ntTSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 BTN2A2-202ENST00000356709 3590 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 LRTOMT-203ENST00000324866 2402 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 AC104051.2-201ENST00000518934 2461 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 WDR87-201ENST00000303868 8847 ntAPPRIS P3 TSL 2 BASIC8.17□□□□□ -1.1
MSX1P28360 NVL-212ENST00000469968 2510 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
MSX1P28360 IL26-201ENST00000229134 1075 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
MSX1P28360 TAAR2-201ENST00000275191 1157 ntAPPRIS P3 BASIC8.17□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms