RNA–Protein interactions for RNA: ENST00000311895.7

ERCC4-201, Transcript of ERCC excision repair 4, endonuclease catalytic subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ERCC4, Length 6,758 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4-201ENST00000311895 DCAF8L2P0C7V8 631 aa14.7□□□□□ -0.06
ERCC4-201ENST00000311895 SUPT5HO00267 1087 aaKnown RBP14.07□□□□□ -0.16
ERCC4-201ENST00000311895 EHMT2Q96KQ7 1210 aa13.92□□□□□ -0.18
ERCC4-201ENST00000311895 SHROOM4Q9ULL8 1493 aa13.78□□□□□ -0.2
ERCC4-201ENST00000311895 NISCHQ9Y2I1 1504 aa13.64□□□□□ -0.23
ERCC4-201ENST00000311895 PELP1Q8IZL8 1130 aaKnown RBP13.5□□□□□ -0.25
ERCC4-201ENST00000311895 TTBK1Q5TCY1 1321 aaPredicted RBP13.45□□□□□ -0.26
ERCC4-201ENST00000311895 FAM9AQ8IZU1 332 aaPredicted RBP13.36□□□□□ -0.27
ERCC4-201ENST00000311895 PCGF6Q9BYE7 350 aa13.36□□□□□ -0.27
ERCC4-201ENST00000311895 APLP2Q06481 763 aa13.3□□□□□ -0.28
ERCC4-201ENST00000311895 RANGAP1P46060 587 aaPredicted RBP13.17□□□□□ -0.3
ERCC4-201ENST00000311895 ERICH6Q7L0X2 663 aa13.13□□□□□ -0.31
ERCC4-201ENST00000311895 CENPBP07199 599 aaPredicted RBP13.06□□□□□ -0.32
ERCC4-201ENST00000311895 CCER1Q8TC90 406 aaPredicted RBP13.05□□□□□ -0.32
ERCC4-201ENST00000311895 YTHDC1Q96MU7 727 aaKnown RBP13.02□□□□□ -0.33
ERCC4-201ENST00000311895 ATP1B4Q9UN42 357 aaPredicted RBP12.97□□□□□ -0.33
ERCC4-201ENST00000311895 PPARGC1BQ86YN6 1023 aaKnown RBP12.91□□□□□ -0.34
ERCC4-201ENST00000311895 ZEB1P37275 1124 aaPredicted RBP12.9□□□□□ -0.34
ERCC4-201ENST00000311895 TRIM41Q8WV44 630 aa12.9□□□□□ -0.34
ERCC4-201ENST00000311895 UBTFP17480 764 aaKnown RBP12.81□□□□□ -0.36
ERCC4-201ENST00000311895 NEFLP07196 543 aa12.8□□□□□ -0.36
ERCC4-201ENST00000311895 MYT1Q01538 1121 aa12.7□□□□□ -0.38
ERCC4-201ENST00000311895 ITGAEP38570 1179 aa12.59□□□□□ -0.39
ERCC4-201ENST00000311895 CNGB1Q14028 1251 aaPredicted RBP12.58□□□□□ -0.4
ERCC4-201ENST00000311895 HRCP23327 699 aa12.58□□□□□ -0.4
ERCC4-201ENST00000311895 TRIM26Q12899 539 aaPredicted RBP12.58□□□□□ -0.4
ERCC4-201ENST00000311895 POLR3GLQ9BT43 218 aa12.57□□□□□ -0.4
ERCC4-201ENST00000311895 LOC105371045A0A1W2PR82 267 aa12.54□□□□□ -0.4
ERCC4-201ENST00000311895 DAXXQ9UER7 740 aaPredicted RBP12.48□□□□□ -0.41
ERCC4-201ENST00000311895 HNRNPUL2Q1KMD3 747 aaKnown RBP12.47□□□□□ -0.41
ERCC4-201ENST00000311895 MYT1LQ9UL68 1186 aa12.38□□□□□ -0.43
ERCC4-201ENST00000311895 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.38□□□□□ -0.43
ERCC4-201ENST00000311895 CHIC1Q5VXU3 224 aa12.34□□□□□ -0.43
ERCC4-201ENST00000311895 DIEXFQ68CQ4 756 aaKnown RBP12.3□□□□□ -0.44
ERCC4-201ENST00000311895 SLC4A1APQ9BWU0 796 aaKnown RBP12.27□□□□□ -0.44
ERCC4-201ENST00000311895 BCANQ96GW7 911 aa12.26□□□□□ -0.45
ERCC4-201ENST00000311895 RTL5Q5HYW3 569 aaPredicted RBP12.22□□□□□ -0.45
ERCC4-201ENST00000311895 CLSPNQ9HAW4 1339 aa12.22□□□□□ -0.45
ERCC4-201ENST00000311895 ZNF316A6NFI3 1004 aaPredicted RBP12.22□□□□□ -0.45
ERCC4-201ENST00000311895 GTF3C3Q9Y5Q9 886 aa12.18□□□□□ -0.46
ERCC4-201ENST00000311895 NEUROD1Q13562 356 aa12.15□□□□□ -0.46
ERCC4-201ENST00000311895 FAM50AQ14320 339 aaKnown RBP12.14□□□□□ -0.47
ERCC4-201ENST00000311895 TRIM52Q96A61 297 aa12.07□□□□□ -0.48
ERCC4-201ENST00000311895 BCL11AQ9H165 835 aa12.05□□□□□ -0.48
ERCC4-201ENST00000311895 ZNF326Q5BKZ1 582 aaKnown RBP12.03□□□□□ -0.48
ERCC4-201ENST00000311895 CDK11AQ9UQ88 783 aaPredicted RBP11.99□□□□□ -0.49
ERCC4-201ENST00000311895 ANP32CO43423 234 aa11.97□□□□□ -0.49
ERCC4-201ENST00000311895 ACIN1Q9UKV3 1341 aaKnown RBP11.89□□□□□ -0.51
ERCC4-201ENST00000311895 SLC24A1O60721 1099 aa11.88□□□□□ -0.51
ERCC4-201ENST00000311895 NPM2Q86SE8 214 aaKnown RBP11.88□□□□□ -0.51
ERCC4-201ENST00000311895 CANXP27824 592 aaKnown RBP11.86□□□□□ -0.51
ERCC4-201ENST00000311895 PABPN1Q86U42 306 aaKnown RBP eCLIP11.85□□□□□ -0.51
ERCC4-201ENST00000311895 ZBTB47Q9UFB7 747 aaPredicted RBP11.85□□□□□ -0.51
ERCC4-201ENST00000311895 ARID3CA6NKF2 412 aa11.84□□□□□ -0.51
ERCC4-201ENST00000311895 P3H3Q8IVL6 736 aa11.81□□□□□ -0.52
ERCC4-201ENST00000311895 ANP32AP39687 249 aaKnown RBP11.79□□□□□ -0.52
ERCC4-201ENST00000311895 FKBP8Q14318 412 aa11.78□□□□□ -0.52
ERCC4-201ENST00000311895 EIF5BO60841 1220 aaKnown RBP11.78□□□□□ -0.52
ERCC4-201ENST00000311895 FBLN2P98095 1184 aa11.77□□□□□ -0.53
ERCC4-201ENST00000311895 SALL2Q9Y467 1007 aaPredicted RBP11.71□□□□□ -0.53
ERCC4-201ENST00000311895 NBR1Q14596 966 aa11.69□□□□□ -0.54
ERCC4-201ENST00000311895 ZNF777Q9ULD5 760 aaPredicted RBP11.69□□□□□ -0.54
ERCC4-201ENST00000311895 FAM9BQ8IZU0 186 aa11.68□□□□□ -0.54
ERCC4-201ENST00000311895 HNRNPUQ00839 825 aaKnown RBP eCLIP11.67□□□□□ -0.54
ERCC4-201ENST00000311895 DDX10Q13206 875 aaKnown RBP11.66□□□□□ -0.54
ERCC4-201ENST00000311895 ARXQ96QS3 562 aa11.66□□□□□ -0.54
ERCC4-201ENST00000311895 ABCC9O60706 1549 aa11.66□□□□□ -0.54
ERCC4-201ENST00000311895 NEFMP07197 916 aa11.65□□□□□ -0.54
ERCC4-201ENST00000311895 HSP90AA1P07900 732 aaKnown RBP11.62□□□□□ -0.55
ERCC4-201ENST00000311895 IRX6P78412 446 aaPredicted RBP11.62□□□□□ -0.55
ERCC4-201ENST00000311895 CSRNP3Q8WYN3 585 aa11.59□□□□□ -0.55
ERCC4-201ENST00000311895 SCAF1Q9H7N4 1312 aaKnown RBP11.58□□□□□ -0.55
ERCC4-201ENST00000311895 ANP32BQ92688 251 aaKnown RBP11.57□□□□□ -0.56
ERCC4-201ENST00000311895 HIRIP3Q9BW71 556 aaPredicted RBP11.57□□□□□ -0.56
ERCC4-201ENST00000311895 TONSLQ96HA7 1378 aa11.56□□□□□ -0.56
ERCC4-201ENST00000311895 CHGAP10645 457 aaKnown RBP11.56□□□□□ -0.56
ERCC4-201ENST00000311895 PLPPR3Q6T4P5 718 aa11.55□□□□□ -0.56
ERCC4-201ENST00000311895 CCDC136Q96JN2 1154 aa11.54□□□□□ -0.56
ERCC4-201ENST00000311895 MIER1Q8N108 512 aa11.52□□□□□ -0.56
ERCC4-201ENST00000311895 UPF2Q9HAU5 1272 aaKnown RBP11.52□□□□□ -0.57
ERCC4-201ENST00000311895 CHIC2Q9UKJ5 165 aa11.52□□□□□ -0.57
ERCC4-201ENST00000311895 SENP3-EIF4A1A0A087X0R7 540 aa11.51□□□□□ -0.57
ERCC4-201ENST00000311895 TMC1Q8TDI8 760 aa11.49□□□□□ -0.57
ERCC4-201ENST00000311895 MYO15BQ96JP2 1530 aa11.48□□□□□ -0.57
ERCC4-201ENST00000311895 DCAF1Q9Y4B6 1507 aa11.47□□□□□ -0.57
ERCC4-201ENST00000311895 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.47□□□□□ -0.57
ERCC4-201ENST00000311895 KDM2AQ9Y2K7 1162 aa11.47□□□□□ -0.57
ERCC4-201ENST00000311895 SENP3Q9H4L4 574 aaPredicted RBP11.46□□□□□ -0.58
ERCC4-201ENST00000311895 MRS2Q9HD23 443 aa11.46□□□□□ -0.58
ERCC4-201ENST00000311895 STAG3Q9UJ98 1225 aa11.44□□□□□ -0.58
ERCC4-201ENST00000311895 GLIPR1L2Q4G1C9 344 aa11.42□□□□□ -0.58
ERCC4-201ENST00000311895 WDR43Q15061 677 aaKnown RBP eCLIP11.41□□□□□ -0.58
ERCC4-201ENST00000311895 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.41□□□□□ -0.58
ERCC4-201ENST00000311895 ZCCHC6Q5VYS8 1495 aaKnown RBP11.39□□□□□ -0.59
ERCC4-201ENST00000311895 ESF1Q9H501 851 aaKnown RBP11.38□□□□□ -0.59
ERCC4-201ENST00000311895 PLEKHG5O94827 1062 aa11.37□□□□□ -0.59
ERCC4-201ENST00000311895 TPRNQ4KMQ1 711 aa11.33□□□□□ -0.6
ERCC4-201ENST00000311895 RTN4Q9NQC3 1192 aaKnown RBP11.32□□□□□ -0.6
ERCC4-201ENST00000311895 SCRIBQ14160 1630 aa11.31□□□□□ -0.6
ERCC4-201ENST00000311895 RRP7BPQ9NSQ0 103 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms