RNA–Protein interactions for RNA: ENST00000616114.4

PCDH15-229, Transcript of protocadherin related 15, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH15, Length 5,846 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH15-229ENST00000616114 NISCHQ9Y2I1 1504 aa16.1■□□□□ 0.17
PCDH15-229ENST00000616114 DCAF8L2P0C7V8 631 aa15.16■□□□□ 0.02
PCDH15-229ENST00000616114 SUPT5HO00267 1087 aaKnown RBP14.79□□□□□ -0.04
PCDH15-229ENST00000616114 SHROOM4Q9ULL8 1493 aa14.66□□□□□ -0.06
PCDH15-229ENST00000616114 PCGF6Q9BYE7 350 aa13.89□□□□□ -0.19
PCDH15-229ENST00000616114 EHMT2Q96KQ7 1210 aa13.84□□□□□ -0.19
PCDH15-229ENST00000616114 ZEB1P37275 1124 aaPredicted RBP13.84□□□□□ -0.19
PCDH15-229ENST00000616114 TRIM41Q8WV44 630 aa13.84□□□□□ -0.19
PCDH15-229ENST00000616114 FAM9AQ8IZU1 332 aaPredicted RBP13.8□□□□□ -0.2
PCDH15-229ENST00000616114 APLP2Q06481 763 aa13.79□□□□□ -0.2
PCDH15-229ENST00000616114 CHIC1Q5VXU3 224 aa13.67□□□□□ -0.22
PCDH15-229ENST00000616114 PELP1Q8IZL8 1130 aaKnown RBP13.61□□□□□ -0.23
PCDH15-229ENST00000616114 TRIM26Q12899 539 aaPredicted RBP13.58□□□□□ -0.24
PCDH15-229ENST00000616114 HRCP23327 699 aa13.55□□□□□ -0.24
PCDH15-229ENST00000616114 CCER1Q8TC90 406 aaPredicted RBP13.51□□□□□ -0.25
PCDH15-229ENST00000616114 CENPBP07199 599 aaPredicted RBP13.47□□□□□ -0.25
PCDH15-229ENST00000616114 UBTFP17480 764 aaKnown RBP13.47□□□□□ -0.25
PCDH15-229ENST00000616114 ZCCHC6Q5VYS8 1495 aaKnown RBP13.45□□□□□ -0.26
PCDH15-229ENST00000616114 CCDC180Q9P1Z9 1646 aa13.44□□□□□ -0.26
PCDH15-229ENST00000616114 TTBK1Q5TCY1 1321 aaPredicted RBP13.43□□□□□ -0.26
PCDH15-229ENST00000616114 LOC105371045A0A1W2PR82 267 aa13.39□□□□□ -0.27
PCDH15-229ENST00000616114 RANGAP1P46060 587 aaPredicted RBP13.28□□□□□ -0.28
PCDH15-229ENST00000616114 ABCC9O60706 1549 aa13.22□□□□□ -0.29
PCDH15-229ENST00000616114 PPARGC1BQ86YN6 1023 aaKnown RBP13.19□□□□□ -0.3
PCDH15-229ENST00000616114 ATP1B4Q9UN42 357 aaPredicted RBP13.13□□□□□ -0.31
PCDH15-229ENST00000616114 DCAF1Q9Y4B6 1507 aa13.08□□□□□ -0.31
PCDH15-229ENST00000616114 SCRIBQ14160 1630 aa13.03□□□□□ -0.32
PCDH15-229ENST00000616114 MYT1Q01538 1121 aa13.02□□□□□ -0.32
PCDH15-229ENST00000616114 YTHDC1Q96MU7 727 aaKnown RBP12.99□□□□□ -0.33
PCDH15-229ENST00000616114 NEFLP07196 543 aa12.98□□□□□ -0.33
PCDH15-229ENST00000616114 HNRNPUL2Q1KMD3 747 aaKnown RBP12.98□□□□□ -0.33
PCDH15-229ENST00000616114 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.96□□□□□ -0.33
PCDH15-229ENST00000616114 PABPN1Q86U42 306 aaKnown RBP eCLIP12.94□□□□□ -0.34
PCDH15-229ENST00000616114 DIEXFQ68CQ4 756 aaKnown RBP12.92□□□□□ -0.34
PCDH15-229ENST00000616114 CSRNP3Q8WYN3 585 aa12.89□□□□□ -0.35
PCDH15-229ENST00000616114 ERICH6Q7L0X2 663 aa12.87□□□□□ -0.35
PCDH15-229ENST00000616114 ITGAEP38570 1179 aa12.86□□□□□ -0.35
PCDH15-229ENST00000616114 NACADO15069 1562 aa12.83□□□□□ -0.36
PCDH15-229ENST00000616114 RSF1Q96T23 1441 aaPredicted RBP12.83□□□□□ -0.36
PCDH15-229ENST00000616114 MYO15BQ96JP2 1530 aa12.8□□□□□ -0.36
PCDH15-229ENST00000616114 RB1CC1Q8TDY2 1594 aa12.79□□□□□ -0.36
PCDH15-229ENST00000616114 ZNF316A6NFI3 1004 aaPredicted RBP12.75□□□□□ -0.37
PCDH15-229ENST00000616114 EEA1Q15075 1411 aa12.71□□□□□ -0.38
PCDH15-229ENST00000616114 FAM50AQ14320 339 aaKnown RBP12.7□□□□□ -0.38
PCDH15-229ENST00000616114 ACIN1Q9UKV3 1341 aaKnown RBP12.61□□□□□ -0.39
PCDH15-229ENST00000616114 BAZ1AQ9NRL2 1556 aaPredicted RBP12.61□□□□□ -0.39
PCDH15-229ENST00000616114 GTF3C3Q9Y5Q9 886 aa12.6□□□□□ -0.39
PCDH15-229ENST00000616114 GOLGA3Q08378 1498 aa12.57□□□□□ -0.4
PCDH15-229ENST00000616114 NEUROD1Q13562 356 aa12.55□□□□□ -0.4
PCDH15-229ENST00000616114 CLSPNQ9HAW4 1339 aa12.54□□□□□ -0.4
PCDH15-229ENST00000616114 TRIM52Q96A61 297 aa12.54□□□□□ -0.4
PCDH15-229ENST00000616114 TNIKQ9UKE5 1360 aa12.54□□□□□ -0.4
PCDH15-229ENST00000616114 ANP32CO43423 234 aa12.53□□□□□ -0.4
PCDH15-229ENST00000616114 CLIP1P30622 1438 aa12.53□□□□□ -0.4
PCDH15-229ENST00000616114 CEP162Q5TB80 1403 aa12.53□□□□□ -0.4
PCDH15-229ENST00000616114 POLR3GLQ9BT43 218 aa12.51□□□□□ -0.41
PCDH15-229ENST00000616114 WRNQ14191 1432 aaPredicted RBP eCLIP12.5□□□□□ -0.41
PCDH15-229ENST00000616114 CECR2Q9BXF3 1484 aa12.48□□□□□ -0.41
PCDH15-229ENST00000616114 CEP164Q9UPV0 1460 aa12.47□□□□□ -0.41
PCDH15-229ENST00000616114 BAZ1BQ9UIG0 1483 aaKnown RBP12.45□□□□□ -0.42
PCDH15-229ENST00000616114 P3H3Q8IVL6 736 aa12.43□□□□□ -0.42
PCDH15-229ENST00000616114 MYT1LQ9UL68 1186 aa12.42□□□□□ -0.42
PCDH15-229ENST00000616114 MROH2BQ7Z745 1585 aa12.41□□□□□ -0.42
PCDH15-229ENST00000616114 CDK11AQ9UQ88 783 aaPredicted RBP12.39□□□□□ -0.43
PCDH15-229ENST00000616114 DAXXQ9UER7 740 aaPredicted RBP12.38□□□□□ -0.43
PCDH15-229ENST00000616114 TONSLQ96HA7 1378 aa12.36□□□□□ -0.43
PCDH15-229ENST00000616114 KIF27Q86VH2 1401 aa12.36□□□□□ -0.43
PCDH15-229ENST00000616114 CCDC88BA6NC98 1476 aa12.33□□□□□ -0.44
PCDH15-229ENST00000616114 TOP2AP11388 1531 aaKnown RBP12.33□□□□□ -0.44
PCDH15-229ENST00000616114 CNGB1Q14028 1251 aaPredicted RBP12.31□□□□□ -0.44
PCDH15-229ENST00000616114 BCANQ96GW7 911 aa12.28□□□□□ -0.44
PCDH15-229ENST00000616114 SOGA1O94964 1423 aa12.27□□□□□ -0.44
PCDH15-229ENST00000616114 MTUS2Q5JR59 1369 aa12.27□□□□□ -0.45
PCDH15-229ENST00000616114 SMARCA2P51531 1590 aa12.26□□□□□ -0.45
PCDH15-229ENST00000616114 SCAF1Q9H7N4 1312 aaKnown RBP12.26□□□□□ -0.45
PCDH15-229ENST00000616114 FBLN2P98095 1184 aa12.26□□□□□ -0.45
PCDH15-229ENST00000616114 WIZO95785 1651 aa12.26□□□□□ -0.45
PCDH15-229ENST00000616114 ZNF326Q5BKZ1 582 aaKnown RBP12.26□□□□□ -0.45
PCDH15-229ENST00000616114 MIER1Q8N108 512 aa12.24□□□□□ -0.45
PCDH15-229ENST00000616114 RTL5Q5HYW3 569 aaPredicted RBP12.23□□□□□ -0.45
PCDH15-229ENST00000616114 VPS8Q8N3P4 1428 aa12.22□□□□□ -0.45
PCDH15-229ENST00000616114 DDX10Q13206 875 aaKnown RBP12.22□□□□□ -0.45
PCDH15-229ENST00000616114 ABCC8Q09428 1581 aa12.22□□□□□ -0.45
PCDH15-229ENST00000616114 ZNF777Q9ULD5 760 aaPredicted RBP12.19□□□□□ -0.46
PCDH15-229ENST00000616114 ARID3CA6NKF2 412 aa12.18□□□□□ -0.46
PCDH15-229ENST00000616114 FHAD1B1AJZ9 1412 aa12.18□□□□□ -0.46
PCDH15-229ENST00000616114 SMARCA4P51532 1647 aa12.17□□□□□ -0.46
PCDH15-229ENST00000616114 FKBP8Q14318 412 aa12.17□□□□□ -0.46
PCDH15-229ENST00000616114 SLC4A1APQ9BWU0 796 aaKnown RBP12.16□□□□□ -0.46
PCDH15-229ENST00000616114 CCNB3Q8WWL7 1395 aa12.15□□□□□ -0.47
PCDH15-229ENST00000616114 HNRNPUQ00839 825 aaKnown RBP eCLIP12.13□□□□□ -0.47
PCDH15-229ENST00000616114 TIMELESSQ9UNS1 1208 aa12.13□□□□□ -0.47
PCDH15-229ENST00000616114 CHIC2Q9UKJ5 165 aa12.12□□□□□ -0.47
PCDH15-229ENST00000616114 CARMIL1Q5VZK9 1371 aa12.12□□□□□ -0.47
PCDH15-229ENST00000616114 CUX2O14529 1486 aa12.1□□□□□ -0.47
PCDH15-229ENST00000616114 EIF4G2P78344 907 aaKnown RBP eCLIP12.1□□□□□ -0.47
PCDH15-229ENST00000616114 TSPY4P0CV99 314 aa12.07□□□□□ -0.48
PCDH15-229ENST00000616114 TSPY10P0CW01 314 aa12.07□□□□□ -0.48
PCDH15-229ENST00000616114 ANP32AP39687 249 aaKnown RBP12.06□□□□□ -0.48
PCDH15-229ENST00000616114 ATAD2BQ9ULI0 1458 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms