Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MTF2-214ENST00000545708 4046 ntTSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 ADGRF4-201ENST00000283303 3162 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 CDH26-202ENST00000348616 3182 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 CLIP1-218ENST00000545889 4633 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 MAGOHB-201ENST00000320756 2623 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 CCNB1IP1-202ENST00000358932 1479 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 GPR19-203ENST00000540510 1751 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 KCNMA1-AS1-206ENST00000600782 1755 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 AC097375.3-201ENST00000515329 2652 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 SPATA31E3P-201ENST00000613133 4214 ntBASIC8.2□□□□□ -1.1
MSX1P28360 SCRN3-201ENST00000272732 3037 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 CBWD1-205ENST00000382389 1807 ntTSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 ADAMTS9-AS1-206ENST00000493124 1511 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 ZNF317-202ENST00000360385 3955 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 AC020658.3-201ENST00000568093 4028 ntBASIC8.2□□□□□ -1.1
MSX1P28360 PSG11-202ENST00000320078 1575 ntAPPRIS P2 TSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 CREB1-201ENST00000353267 7588 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 SUMO2-202ENST00000420826 3190 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 PCDH15-233ENST00000621708 5700 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 CNFN-201ENST00000222032 523 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 RCL1-201ENST00000381728 758 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 Y_RNA.390-201ENST00000383932 102 ntBASIC8.2□□□□□ -1.1
MSX1P28360 RNU6-157P-201ENST00000383957 107 ntBASIC8.2□□□□□ -1.1
MSX1P28360 SNORD83A-201ENST00000386747 95 ntBASIC8.2□□□□□ -1.1
MSX1P28360 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 AL024509.1-201ENST00000397093 927 ntBASIC8.2□□□□□ -1.1
MSX1P28360 MRO-202ENST00000398439 951 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 OR2A12-201ENST00000408949 1046 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
MSX1P28360 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 Z98751.1-201ENST00000413827 381 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AL390866.1-201ENST00000425137 469 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 HIGD1AP12-201ENST00000427832 281 ntBASIC8.2□□□□□ -1.1
MSX1P28360 MYL6BP1-201ENST00000429485 615 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AL606490.7-201ENST00000433136 191 ntBASIC8.2□□□□□ -1.1
MSX1P28360 LINC00385-201ENST00000435044 374 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 LINC01468-202ENST00000435813 975 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 BSNDP4-201ENST00000436076 388 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 MIR4435-2HG-208ENST00000439494 707 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 CASP3P1-201ENST00000446037 609 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AL020997.1-201ENST00000446554 349 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AC114755.5-201ENST00000447760 831 ntBASIC8.2□□□□□ -1.1
MSX1P28360 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC8.2□□□□□ -1.1
MSX1P28360 AL118496.2-201ENST00000448300 230 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AC093157.1-205ENST00000449473 1298 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 CCNJP1-201ENST00000450600 1149 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AC009229.1-201ENST00000450854 622 ntTSL 4 BASIC8.2□□□□□ -1.1
MSX1P28360 AL358876.1-201ENST00000453364 1075 ntBASIC8.2□□□□□ -1.1
MSX1P28360 CFTRP1-201ENST00000456646 183 ntBASIC8.2□□□□□ -1.1
MSX1P28360 CENPS-202ENST00000462462 584 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 RN7SL318P-201ENST00000471955 297 ntBASIC8.2□□□□□ -1.1
MSX1P28360 RN7SL215P-201ENST00000487718 298 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC8.2□□□□□ -1.1
MSX1P28360 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 AC097494.1-201ENST00000512898 732 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC8.2□□□□□ -1.1
MSX1P28360 OR7E8P-201ENST00000532847 1000 ntBASIC8.2□□□□□ -1.1
MSX1P28360 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 AC055716.1-201ENST00000550077 495 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AC089984.2-201ENST00000550293 1201 ntBASIC8.2□□□□□ -1.1
MSX1P28360 OR11H3P-201ENST00000554547 982 ntBASIC8.2□□□□□ -1.1
MSX1P28360 LINC02321-201ENST00000555975 384 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 LINC01227-202ENST00000561719 755 ntTSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 LINC02137-201ENST00000561906 644 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 AC093249.3-201ENST00000562444 424 ntBASIC8.2□□□□□ -1.1
MSX1P28360 USP2-AS1-205ENST00000578923 895 ntTSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 AC011477.1-201ENST00000591884 544 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 OR7D1P-201ENST00000592739 933 ntBASIC8.2□□□□□ -1.1
MSX1P28360 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 LINC00635-210ENST00000600240 714 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 MTCO3P22-201ENST00000603219 784 ntBASIC8.2□□□□□ -1.1
MSX1P28360 uc_338.30-201ENST00000612038 168 ntBASIC8.2□□□□□ -1.1
MSX1P28360 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC8.2□□□□□ -1.1
MSX1P28360 PPARGC1A-218ENST00000617484 1026 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC8.2□□□□□ -1.1
MSX1P28360 CR381653.1-205ENST00000623409 580 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 HLA-B-257ENST00000640094 147 ntBASIC8.2□□□□□ -1.1
MSX1P28360 LRRC37A6P-202ENST00000448648 5444 ntBASIC8.2□□□□□ -1.1
MSX1P28360 CABYR-202ENST00000399481 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 AP003086.1-201ENST00000513207 1642 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 ACSL5-205ENST00000433418 3281 ntTSL 5 BASIC8.2□□□□□ -1.1
MSX1P28360 KCNMB3-205ENST00000485523 7246 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 OTOA-204ENST00000388958 3610 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 LINC00547-201ENST00000612438 3314 ntTSL 2 BASIC8.2□□□□□ -1.1
MSX1P28360 SRSF6-201ENST00000244020 4325 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 SCUBE3-201ENST00000274938 7356 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 NUP155-201ENST00000231498 8143 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
MSX1P28360 SCYL3-203ENST00000367772 3090 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms