RNA–Protein interactions for RNA: ENST00000612438.1

LINC00547-201, long intergenic non-protein coding RNA 547, humanhuman

TSL 2 BASIC

Gene LINC00547, Length 3,314 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00547-201ENST00000612438 NISCHQ9Y2I1 1504 aa17.08■□□□□ 0.32
LINC00547-201ENST00000612438 PELP1Q8IZL8 1130 aaKnown RBP15.41■□□□□ 0.06
LINC00547-201ENST00000612438 MYT1Q01538 1121 aa15.13■□□□□ 0.01
LINC00547-201ENST00000612438 SHROOM4Q9ULL8 1493 aa14.74□□□□□ -0.05
LINC00547-201ENST00000612438 SUPT5HO00267 1087 aaKnown RBP14.59□□□□□ -0.07
LINC00547-201ENST00000612438 HRCP23327 699 aa14.56□□□□□ -0.08
LINC00547-201ENST00000612438 ZCCHC6Q5VYS8 1495 aaKnown RBP14.49□□□□□ -0.09
LINC00547-201ENST00000612438 DCAF8L2P0C7V8 631 aa14.48□□□□□ -0.09
LINC00547-201ENST00000612438 TTBK1Q5TCY1 1321 aaPredicted RBP14.46□□□□□ -0.1
LINC00547-201ENST00000612438 CCDC180Q9P1Z9 1646 aa14.35□□□□□ -0.11
LINC00547-201ENST00000612438 CHIC1Q5VXU3 224 aa14.35□□□□□ -0.11
LINC00547-201ENST00000612438 MYO15BQ96JP2 1530 aa14.32□□□□□ -0.12
LINC00547-201ENST00000612438 SCAF1Q9H7N4 1312 aaKnown RBP14.16□□□□□ -0.14
LINC00547-201ENST00000612438 PCGF6Q9BYE7 350 aa14.15□□□□□ -0.14
LINC00547-201ENST00000612438 PPARGC1BQ86YN6 1023 aaKnown RBP14.1□□□□□ -0.15
LINC00547-201ENST00000612438 DCAF1Q9Y4B6 1507 aa14.03□□□□□ -0.16
LINC00547-201ENST00000612438 LOC105371045A0A1W2PR82 267 aa13.93□□□□□ -0.18
LINC00547-201ENST00000612438 PRKCSHP14314 528 aaPredicted RBP13.91□□□□□ -0.18
LINC00547-201ENST00000612438 TRIM26Q12899 539 aaPredicted RBP13.84□□□□□ -0.19
LINC00547-201ENST00000612438 BCL11AQ9H165 835 aa13.83□□□□□ -0.2
LINC00547-201ENST00000612438 ERICH6Q7L0X2 663 aa13.76□□□□□ -0.21
LINC00547-201ENST00000612438 ABCC9O60706 1549 aa13.76□□□□□ -0.21
LINC00547-201ENST00000612438 CENPBP07199 599 aaPredicted RBP13.67□□□□□ -0.22
LINC00547-201ENST00000612438 ZEB1P37275 1124 aaPredicted RBP13.66□□□□□ -0.22
LINC00547-201ENST00000612438 FAM9AQ8IZU1 332 aaPredicted RBP13.64□□□□□ -0.23
LINC00547-201ENST00000612438 ACIN1Q9UKV3 1341 aaKnown RBP13.64□□□□□ -0.23
LINC00547-201ENST00000612438 RSF1Q96T23 1441 aaPredicted RBP13.63□□□□□ -0.23
LINC00547-201ENST00000612438 TRIM41Q8WV44 630 aa13.59□□□□□ -0.23
LINC00547-201ENST00000612438 APLP2Q06481 763 aa13.57□□□□□ -0.24
LINC00547-201ENST00000612438 GTF3C3Q9Y5Q9 886 aa13.54□□□□□ -0.24
LINC00547-201ENST00000612438 SCRIBQ14160 1630 aa13.51□□□□□ -0.25
LINC00547-201ENST00000612438 RB1CC1Q8TDY2 1594 aa13.5□□□□□ -0.25
LINC00547-201ENST00000612438 NEUROD1Q13562 356 aa13.49□□□□□ -0.25
LINC00547-201ENST00000612438 ANP32EQ9BTT0 268 aa13.34□□□□□ -0.27
LINC00547-201ENST00000612438 EHMT2Q96KQ7 1210 aa13.33□□□□□ -0.28
LINC00547-201ENST00000612438 CECR2Q9BXF3 1484 aa13.31□□□□□ -0.28
LINC00547-201ENST00000612438 MROH2BQ7Z745 1585 aa13.29□□□□□ -0.28
LINC00547-201ENST00000612438 PABPN1Q86U42 306 aaKnown RBP eCLIP13.26□□□□□ -0.29
LINC00547-201ENST00000612438 NACADO15069 1562 aa13.24□□□□□ -0.29
LINC00547-201ENST00000612438 WIZO95785 1651 aa13.21□□□□□ -0.29
LINC00547-201ENST00000612438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.21□□□□□ -0.29
LINC00547-201ENST00000612438 CCER1Q8TC90 406 aaPredicted RBP13.19□□□□□ -0.3
LINC00547-201ENST00000612438 SLC24A1O60721 1099 aa13.15□□□□□ -0.3
LINC00547-201ENST00000612438 EIF4G1Q04637 1599 aaKnown RBP13.15□□□□□ -0.3
LINC00547-201ENST00000612438 BAZ1AQ9NRL2 1556 aaPredicted RBP13.15□□□□□ -0.3
LINC00547-201ENST00000612438 CSRNP3Q8WYN3 585 aa13.15□□□□□ -0.31
LINC00547-201ENST00000612438 WRNQ14191 1432 aaPredicted RBP eCLIP13.11□□□□□ -0.31
LINC00547-201ENST00000612438 DIEXFQ68CQ4 756 aaKnown RBP13.09□□□□□ -0.31
LINC00547-201ENST00000612438 CCDC88BA6NC98 1476 aa13.03□□□□□ -0.32
LINC00547-201ENST00000612438 CEP162Q5TB80 1403 aa13.03□□□□□ -0.32
LINC00547-201ENST00000612438 TNIKQ9UKE5 1360 aa13.01□□□□□ -0.33
LINC00547-201ENST00000612438 TOP2AP11388 1531 aaKnown RBP13.01□□□□□ -0.33
LINC00547-201ENST00000612438 ABCC8Q09428 1581 aa13.01□□□□□ -0.33
LINC00547-201ENST00000612438 SOGA1O94964 1423 aa12.97□□□□□ -0.33
LINC00547-201ENST00000612438 EEA1Q15075 1411 aa12.96□□□□□ -0.34
LINC00547-201ENST00000612438 SMARCA2P51531 1590 aa12.95□□□□□ -0.34
LINC00547-201ENST00000612438 ZNF316A6NFI3 1004 aaPredicted RBP12.94□□□□□ -0.34
LINC00547-201ENST00000612438 SMARCA4P51532 1647 aa12.93□□□□□ -0.34
LINC00547-201ENST00000612438 UBTFP17480 764 aaKnown RBP12.9□□□□□ -0.34
LINC00547-201ENST00000612438 RUSC2Q8N2Y8 1516 aa12.89□□□□□ -0.35
LINC00547-201ENST00000612438 GOLGA3Q08378 1498 aa12.86□□□□□ -0.35
LINC00547-201ENST00000612438 TSHZ2Q9NRE2 1034 aa12.85□□□□□ -0.35
LINC00547-201ENST00000612438 EIF5BO60841 1220 aaKnown RBP12.84□□□□□ -0.35
LINC00547-201ENST00000612438 ANO8Q9HCE9 1232 aaPredicted RBP12.84□□□□□ -0.35
LINC00547-201ENST00000612438 UBE2Q2Q8WVN8 375 aa12.81□□□□□ -0.36
LINC00547-201ENST00000612438 CLSPNQ9HAW4 1339 aa12.8□□□□□ -0.36
LINC00547-201ENST00000612438 YTHDC1Q96MU7 727 aaKnown RBP12.8□□□□□ -0.36
LINC00547-201ENST00000612438 DAXXQ9UER7 740 aaPredicted RBP12.8□□□□□ -0.36
LINC00547-201ENST00000612438 MIER1Q8N108 512 aa12.78□□□□□ -0.36
LINC00547-201ENST00000612438 HNRNPUL2Q1KMD3 747 aaKnown RBP12.77□□□□□ -0.37
LINC00547-201ENST00000612438 CEP164Q9UPV0 1460 aa12.77□□□□□ -0.37
LINC00547-201ENST00000612438 UNC13AQ9UPW8 1703 aa12.76□□□□□ -0.37
LINC00547-201ENST00000612438 KIF21BO75037 1637 aa12.74□□□□□ -0.37
LINC00547-201ENST00000612438 CLIP1P30622 1438 aa12.74□□□□□ -0.37
LINC00547-201ENST00000612438 VPS8Q8N3P4 1428 aa12.72□□□□□ -0.37
LINC00547-201ENST00000612438 SUPT16HQ9Y5B9 1047 aaKnown RBP12.7□□□□□ -0.38
LINC00547-201ENST00000612438 SYNJ1O43426 1573 aa12.69□□□□□ -0.38
LINC00547-201ENST00000612438 PEG3Q9GZU2 1588 aa12.68□□□□□ -0.38
LINC00547-201ENST00000612438 BICRAQ9NZM4 1560 aa12.68□□□□□ -0.38
LINC00547-201ENST00000612438 BAZ1BQ9UIG0 1483 aaKnown RBP12.68□□□□□ -0.38
LINC00547-201ENST00000612438 MYT1LQ9UL68 1186 aa12.65□□□□□ -0.38
LINC00547-201ENST00000612438 RAPGEF2Q9Y4G8 1499 aa12.63□□□□□ -0.39
LINC00547-201ENST00000612438 ERICH6BQ5W0A0 696 aa12.61□□□□□ -0.39
LINC00547-201ENST00000612438 SALL2Q9Y467 1007 aaPredicted RBP12.6□□□□□ -0.39
LINC00547-201ENST00000612438 DHX57Q6P158 1386 aaKnown RBP12.57□□□□□ -0.4
LINC00547-201ENST00000612438 ATAD2BQ9ULI0 1458 aa12.56□□□□□ -0.4
LINC00547-201ENST00000612438 RANGAP1P46060 587 aaPredicted RBP12.55□□□□□ -0.4
LINC00547-201ENST00000612438 CCDC136Q96JN2 1154 aa12.52□□□□□ -0.4
LINC00547-201ENST00000612438 TOP2BQ02880 1626 aa12.52□□□□□ -0.41
LINC00547-201ENST00000612438 PKNOX2Q96KN3 472 aa12.51□□□□□ -0.41
LINC00547-201ENST00000612438 DEKP35659 375 aaKnown RBP12.5□□□□□ -0.41
LINC00547-201ENST00000612438 RBM19Q9Y4C8 960 aaKnown RBP12.5□□□□□ -0.41
LINC00547-201ENST00000612438 ERICH3Q5RHP9 1530 aa12.5□□□□□ -0.41
LINC00547-201ENST00000612438 ARAP1Q96P48 1450 aa12.5□□□□□ -0.41
LINC00547-201ENST00000612438 PRXQ9BXM0 1461 aa12.5□□□□□ -0.41
LINC00547-201ENST00000612438 KANK4Q5T7N3 995 aaPredicted RBP12.49□□□□□ -0.41
LINC00547-201ENST00000612438 RRBP1Q9P2E9 1410 aaKnown RBP12.47□□□□□ -0.41
LINC00547-201ENST00000612438 PLEKHG5O94827 1062 aa12.47□□□□□ -0.41
LINC00547-201ENST00000612438 BIVM-ERCC5R4GMW8 1640 aa12.46□□□□□ -0.42
LINC00547-201ENST00000612438 CUX2O14529 1486 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms