Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 KRT8P20-201ENST00000423953 1409 ntBASIC21.05■□□□□ 0.96
USP3Q9Y6I4 KRT8P17-201ENST00000453110 1448 ntBASIC21.05■□□□□ 0.96
USP3Q9Y6I4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.05■□□□□ 0.96
USP3Q9Y6I4 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 AC073648.6-201ENST00000641589 218 ntBASIC21.05■□□□□ 0.96
USP3Q9Y6I4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 AL162377.1-201ENST00000618844 1793 ntBASIC21.05■□□□□ 0.96
USP3Q9Y6I4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP3Q9Y6I4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 PRORSD1P-201ENST00000295112 541 ntBASIC21.04■□□□□ 0.96
USP3Q9Y6I4 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP3Q9Y6I4 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 HLA-G-202ENST00000376815 851 ntBASIC21.03■□□□□ 0.96
USP3Q9Y6I4 HLA-G-203ENST00000376818 1127 ntBASIC21.03■□□□□ 0.96
USP3Q9Y6I4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 KRT18P29-201ENST00000397031 1267 ntBASIC21.03■□□□□ 0.96
USP3Q9Y6I4 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 AL512408.1-201ENST00000569378 2000 ntBASIC21.03■□□□□ 0.96
USP3Q9Y6I4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP3Q9Y6I4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP3Q9Y6I4 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP3Q9Y6I4 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.02■□□□□ 0.96
USP3Q9Y6I4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
USP3Q9Y6I4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
USP3Q9Y6I4 KRT17P3-201ENST00000420566 1262 ntBASIC21.02■□□□□ 0.96
USP3Q9Y6I4 AC073130.3-201ENST00000624389 2278 ntBASIC21.02■□□□□ 0.95
USP3Q9Y6I4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
USP3Q9Y6I4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.02■□□□□ 0.95
USP3Q9Y6I4 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
USP3Q9Y6I4 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21■□□□□ 0.95
USP3Q9Y6I4 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21■□□□□ 0.95
USP3Q9Y6I4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21■□□□□ 0.95
USP3Q9Y6I4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USP3Q9Y6I4 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
USP3Q9Y6I4 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms