Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC38.33■■■■□ 3.73
SHROOM4Q9ULL8 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC38.33■■■■□ 3.73
SHROOM4Q9ULL8 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC38.33■■■■□ 3.73
SHROOM4Q9ULL8 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC38.33■■■■□ 3.73
SHROOM4Q9ULL8 AL121829.2-201ENST00000620908 328 ntBASIC38.33■■■■□ 3.73
SHROOM4Q9ULL8 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC38.33■■■■□ 3.73
SHROOM4Q9ULL8 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC38.32■■■■□ 3.73
SHROOM4Q9ULL8 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC38.32■■■■□ 3.73
SHROOM4Q9ULL8 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC38.32■■■■□ 3.73
SHROOM4Q9ULL8 LINC01568-207ENST00000641790 1380 ntBASIC38.32■■■■□ 3.73
SHROOM4Q9ULL8 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 FDX2-207ENST00000494368 584 ntTSL 4 BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC38.32■■■■□ 3.72
SHROOM4Q9ULL8 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC38.31■■■■□ 3.72
SHROOM4Q9ULL8 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC38.31■■■■□ 3.72
SHROOM4Q9ULL8 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC38.31■■■■□ 3.72
SHROOM4Q9ULL8 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC38.31■■■■□ 3.72
SHROOM4Q9ULL8 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC38.31■■■■□ 3.72
SHROOM4Q9ULL8 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC38.31■■■■□ 3.72
SHROOM4Q9ULL8 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC38.31■■■■□ 3.72
SHROOM4Q9ULL8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC38.31■■■■□ 3.72
SHROOM4Q9ULL8 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC38.31■■■■□ 3.72
SHROOM4Q9ULL8 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 AC073195.1-201ENST00000607241 877 ntBASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC38.3■■■■□ 3.72
SHROOM4Q9ULL8 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC38.29■■■■□ 3.72
SHROOM4Q9ULL8 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 FAM197Y1-201ENST00000421178 764 ntBASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 FITM1-202ENST00000559294 800 ntBASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 AC010947.1-201ENST00000623454 693 ntBASIC38.28■■■■□ 3.72
SHROOM4Q9ULL8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 KRT18P22-201ENST00000402024 1347 ntBASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 BID-212ENST00000614949 1988 ntTSL 5 BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 HES2-206ENST00000489730 730 ntTSL 2 BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC38.27■■■■□ 3.72
SHROOM4Q9ULL8 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC38.26■■■■□ 3.72
SHROOM4Q9ULL8 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC38.26■■■■□ 3.72
SHROOM4Q9ULL8 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.72
SHROOM4Q9ULL8 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.72
SHROOM4Q9ULL8 PGM5P4-201ENST00000421970 445 ntBASIC38.26■■■■□ 3.72
SHROOM4Q9ULL8 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC38.26■■■■□ 3.72
SHROOM4Q9ULL8 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC38.26■■■■□ 3.72
SHROOM4Q9ULL8 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC38.26■■■■□ 3.71
SHROOM4Q9ULL8 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 NAPSB-206ENST00000562112 1266 ntBASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 STAC-204ENST00000457375 1366 ntTSL 2 BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
SHROOM4Q9ULL8 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC38.25■■■■□ 3.71
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms