Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CHMP1AQ9HD42 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHMP1AQ9HD42 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CHMP1AQ9HD42 KRT16P2-201ENST00000414673 1423 ntBASIC17.21■□□□□ 0.34
CHMP1AQ9HD42 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.21■□□□□ 0.34
CHMP1AQ9HD42 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 AL139246.5-201ENST00000606645 996 ntBASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHMP1AQ9HD42 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 AC098818.2-201ENST00000564925 2320 ntBASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 HYI-206ENST00000372434 1025 ntTSL 5 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 SUDS3P1-201ENST00000505831 966 ntBASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 AC138907.5-202ENST00000569484 235 ntBASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.19■□□□□ 0.34
CHMP1AQ9HD42 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 AL162377.1-201ENST00000618844 1793 ntBASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
CHMP1AQ9HD42 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms