Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 GALNS-213ENST00000569433 723 ntTSL 3 BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
LIMD2Q9BT23 AC011484.1-201ENST00000377652 1995 ntBASIC11.9□□□□□ -0.5
LIMD2Q9BT23 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 ERF-202ENST00000440177 2032 ntTSL 2 BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 CDV3P1-201ENST00000471403 739 ntBASIC11.9□□□□□ -0.5
LIMD2Q9BT23 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 SLC7A5P1-201ENST00000568957 537 ntBASIC11.9□□□□□ -0.5
LIMD2Q9BT23 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
LIMD2Q9BT23 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
LIMD2Q9BT23 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
LIMD2Q9BT23 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC11.9□□□□□ -0.51
LIMD2Q9BT23 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 KRT18P11-201ENST00000435214 1283 ntBASIC11.89□□□□□ -0.51
LIMD2Q9BT23 AC034268.1-201ENST00000441047 882 ntBASIC11.89□□□□□ -0.51
LIMD2Q9BT23 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 AC116050.2-201ENST00000612102 1779 ntBASIC11.89□□□□□ -0.51
LIMD2Q9BT23 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC11.89□□□□□ -0.51
LIMD2Q9BT23 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC11.88□□□□□ -0.51
LIMD2Q9BT23 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
LIMD2Q9BT23 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LIMD2Q9BT23 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
LIMD2Q9BT23 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LIMD2Q9BT23 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC11.88□□□□□ -0.51
LIMD2Q9BT23 EXOC3-AS1-202ENST00000623673 1663 ntBASIC11.88□□□□□ -0.51
LIMD2Q9BT23 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LIMD2Q9BT23 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
LIMD2Q9BT23 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms