Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
LRCH3Q96II8 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LRCH3Q96II8 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
LRCH3Q96II8 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRCH3Q96II8 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
LRCH3Q96II8 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRCH3Q96II8 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRCH3Q96II8 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRCH3Q96II8 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LRCH3Q96II8 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.82■■□□□ 1.08
LRCH3Q96II8 TSPY5P-201ENST00000426936 936 ntBASIC21.82■■□□□ 1.08
LRCH3Q96II8 YBX1P2-201ENST00000489612 999 ntBASIC21.82■■□□□ 1.08
LRCH3Q96II8 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.82■■□□□ 1.08
LRCH3Q96II8 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.82■■□□□ 1.08
LRCH3Q96II8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
LRCH3Q96II8 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC21.82■■□□□ 1.08
LRCH3Q96II8 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.82■■□□□ 1.08
LRCH3Q96II8 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LRCH3Q96II8 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LRCH3Q96II8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.82■■□□□ 1.08
LRCH3Q96II8 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRCH3Q96II8 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.81■■□□□ 1.08
LRCH3Q96II8 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.81■■□□□ 1.08
LRCH3Q96II8 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.81■■□□□ 1.08
LRCH3Q96II8 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRCH3Q96II8 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRCH3Q96II8 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LRCH3Q96II8 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.81■■□□□ 1.08
LRCH3Q96II8 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.81■■□□□ 1.08
LRCH3Q96II8 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LRCH3Q96II8 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LRCH3Q96II8 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.81■■□□□ 1.08
LRCH3Q96II8 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
LRCH3Q96II8 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
LRCH3Q96II8 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.8■■□□□ 1.08
LRCH3Q96II8 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRCH3Q96II8 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRCH3Q96II8 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.8■■□□□ 1.08
LRCH3Q96II8 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRCH3Q96II8 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.8■■□□□ 1.08
LRCH3Q96II8 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
LRCH3Q96II8 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.8■■□□□ 1.08
LRCH3Q96II8 KSR1P1-201ENST00000446298 240 ntBASIC21.8■■□□□ 1.08
LRCH3Q96II8 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.8■■□□□ 1.08
LRCH3Q96II8 AC004264.1-201ENST00000608354 794 ntBASIC21.8■■□□□ 1.08
LRCH3Q96II8 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LRCH3Q96II8 KRT16P1-201ENST00000399124 1418 ntBASIC21.8■■□□□ 1.08
LRCH3Q96II8 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.79■■□□□ 1.08
LRCH3Q96II8 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LRCH3Q96II8 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.79■■□□□ 1.08
LRCH3Q96II8 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
LRCH3Q96II8 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.79■■□□□ 1.08
LRCH3Q96II8 LINC00565-201ENST00000562710 2331 ntBASIC21.79■■□□□ 1.08
LRCH3Q96II8 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.79■■□□□ 1.08
LRCH3Q96II8 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
LRCH3Q96II8 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRCH3Q96II8 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
LRCH3Q96II8 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRCH3Q96II8 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LRCH3Q96II8 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRCH3Q96II8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LRCH3Q96II8 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
LRCH3Q96II8 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.78■■□□□ 1.08
LRCH3Q96II8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
LRCH3Q96II8 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.78■■□□□ 1.08
LRCH3Q96II8 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.78■■□□□ 1.08
LRCH3Q96II8 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.78■■□□□ 1.08
LRCH3Q96II8 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.78■■□□□ 1.08
LRCH3Q96II8 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
LRCH3Q96II8 AC092068.2-201ENST00000590491 1708 ntBASIC21.77■■□□□ 1.08
LRCH3Q96II8 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRCH3Q96II8 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LRCH3Q96II8 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 NIFKP9-201ENST00000419265 221 ntBASIC21.77■■□□□ 1.08
LRCH3Q96II8 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.77■■□□□ 1.08
LRCH3Q96II8 AC069148.1-201ENST00000608741 768 ntBASIC21.77■■□□□ 1.08
LRCH3Q96II8 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRCH3Q96II8 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRCH3Q96II8 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LRCH3Q96II8 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LRCH3Q96II8 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LRCH3Q96II8 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.77■■□□□ 1.08
LRCH3Q96II8 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms