Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.6■□□□□ 0.57
DEPDC4Q8N2C3 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
DEPDC4Q8N2C3 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.58■□□□□ 0.57
DEPDC4Q8N2C3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 AC004911.1-201ENST00000416316 871 ntBASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
DEPDC4Q8N2C3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 AC098818.2-201ENST00000564925 2320 ntBASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
DEPDC4Q8N2C3 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms