Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 KRT8P17-201ENST00000453110 1448 ntBASIC19.65■□□□□ 0.74
VRK3Q8IV63 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
VRK3Q8IV63 BX119927.1-201ENST00000636596 1552 ntBASIC19.65■□□□□ 0.74
VRK3Q8IV63 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VRK3Q8IV63 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
VRK3Q8IV63 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VRK3Q8IV63 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VRK3Q8IV63 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
VRK3Q8IV63 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
VRK3Q8IV63 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VRK3Q8IV63 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.64■□□□□ 0.73
VRK3Q8IV63 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.64■□□□□ 0.73
VRK3Q8IV63 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.64■□□□□ 0.73
VRK3Q8IV63 AL031963.3-201ENST00000606441 850 ntBASIC19.64■□□□□ 0.73
VRK3Q8IV63 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
VRK3Q8IV63 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.64■□□□□ 0.73
VRK3Q8IV63 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.64■□□□□ 0.73
VRK3Q8IV63 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
VRK3Q8IV63 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VRK3Q8IV63 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VRK3Q8IV63 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VRK3Q8IV63 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VRK3Q8IV63 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.62■□□□□ 0.73
VRK3Q8IV63 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VRK3Q8IV63 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.62■□□□□ 0.73
VRK3Q8IV63 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VRK3Q8IV63 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
VRK3Q8IV63 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VRK3Q8IV63 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.62■□□□□ 0.73
VRK3Q8IV63 AC023632.3-201ENST00000521633 145 ntBASIC19.62■□□□□ 0.73
VRK3Q8IV63 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VRK3Q8IV63 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
VRK3Q8IV63 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
VRK3Q8IV63 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.62■□□□□ 0.73
VRK3Q8IV63 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VRK3Q8IV63 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.62■□□□□ 0.73
VRK3Q8IV63 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VRK3Q8IV63 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VRK3Q8IV63 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VRK3Q8IV63 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VRK3Q8IV63 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VRK3Q8IV63 AL691432.2-201ENST00000607222 2038 ntBASIC19.61■□□□□ 0.73
VRK3Q8IV63 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VRK3Q8IV63 KRT8P20-201ENST00000423953 1409 ntBASIC19.61■□□□□ 0.73
VRK3Q8IV63 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VRK3Q8IV63 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms