Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 MFF-205ENST00000354503 1085 ntTSL 2 BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 ABHD17AP6-201ENST00000458502 1044 ntBASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 AL589743.5-201ENST00000616611 1050 ntBASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SH3RF1Q7Z6J0 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 OR2A1-AS1-207ENST00000486094 819 ntBASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
SH3RF1Q7Z6J0 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 AL512408.1-201ENST00000569378 2000 ntBASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SH3RF1Q7Z6J0 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 TSPY15P-201ENST00000457163 923 ntBASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 REXO2-208ENST00000539754 791 ntTSL 2 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SH3RF1Q7Z6J0 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 AC116050.2-201ENST00000612102 1779 ntBASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 AC233702.5-201ENST00000584107 538 ntBASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SH3RF1Q7Z6J0 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
SH3RF1Q7Z6J0 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms