Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 AC006011.2-201ENST00000621313 1158 ntBASIC24.75■■□□□ 1.55
CCDC88AQ3V6T2 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 TMA16-209ENST00000513272 803 ntTSL 2 BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
CCDC88AQ3V6T2 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.73■■□□□ 1.55
CCDC88AQ3V6T2 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 PNN-205ENST00000556530 601 ntTSL 2 BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 FBXW4P1-201ENST00000426721 2239 ntBASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 AK4P3-201ENST00000418260 669 ntBASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 FITM1-202ENST00000559294 800 ntBASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC88AQ3V6T2 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 MYC-208ENST00000641036 567 ntBASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC88AQ3V6T2 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
CCDC88AQ3V6T2 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
CCDC88AQ3V6T2 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.55
CCDC88AQ3V6T2 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC24.7■■□□□ 1.55
CCDC88AQ3V6T2 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 AL137013.1-201ENST00000432946 1228 ntBASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 DUSP5P1-201ENST00000441325 1139 ntBASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC88AQ3V6T2 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 ECEL1P2-202ENST00000465689 757 ntBASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CCDC88AQ3V6T2 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 LIN28AP1-201ENST00000429574 405 ntBASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 AP002982.1-201ENST00000492365 877 ntBASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC24.68■■□□□ 1.54
CCDC88AQ3V6T2 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms