Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC144BQ3MJ40 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 CRK-204ENST00000574295 1391 ntTSL 5 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 AC105020.6-201ENST00000621523 1217 ntBASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC144BQ3MJ40 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 AC116050.2-201ENST00000612102 1779 ntBASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC144BQ3MJ40 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 ME2-218ENST00000640965 2476 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 AC069544.1-201ENST00000609399 999 ntBASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
CCDC144BQ3MJ40 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 MIR718-201ENST00000390190 70 ntBASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.25■■□□□ 1.31
CCDC144BQ3MJ40 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC144BQ3MJ40 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms