Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 HLA-G-202ENST00000376815 851 ntBASIC23.3■■□□□ 1.32
HMGCS2P54868 HLA-G-203ENST00000376818 1127 ntBASIC23.3■■□□□ 1.32
HMGCS2P54868 TMPOP1-202ENST00000424642 1267 ntBASIC23.3■■□□□ 1.32
HMGCS2P54868 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC23.3■■□□□ 1.32
HMGCS2P54868 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC23.3■■□□□ 1.32
HMGCS2P54868 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC23.3■■□□□ 1.32
HMGCS2P54868 REXO1L10P-201ENST00000615707 1290 ntBASIC23.3■■□□□ 1.32
HMGCS2P54868 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC23.3■■□□□ 1.32
HMGCS2P54868 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGCS2P54868 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC23.3■■□□□ 1.32
HMGCS2P54868 AC079598.2-202ENST00000546624 1451 ntBASIC23.3■■□□□ 1.32
HMGCS2P54868 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
HMGCS2P54868 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.3■■□□□ 1.32
HMGCS2P54868 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC23.29■■□□□ 1.32
HMGCS2P54868 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGCS2P54868 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGCS2P54868 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
HMGCS2P54868 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
HMGCS2P54868 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC23.29■■□□□ 1.32
HMGCS2P54868 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HMGCS2P54868 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
HMGCS2P54868 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGCS2P54868 KRT8P9-201ENST00000558927 1449 ntBASIC23.29■■□□□ 1.32
HMGCS2P54868 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC23.29■■□□□ 1.32
HMGCS2P54868 MIR6786-201ENST00000616843 113 ntBASIC23.29■■□□□ 1.32
HMGCS2P54868 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC23.29■■□□□ 1.32
HMGCS2P54868 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HMGCS2P54868 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGCS2P54868 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGCS2P54868 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
HMGCS2P54868 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGCS2P54868 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGCS2P54868 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC23.28■■□□□ 1.32
HMGCS2P54868 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGCS2P54868 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC23.28■■□□□ 1.32
HMGCS2P54868 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGCS2P54868 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGCS2P54868 AP000525.1-201ENST00000608286 694 ntBASIC23.28■■□□□ 1.32
HMGCS2P54868 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
HMGCS2P54868 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGCS2P54868 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC23.28■■□□□ 1.32
HMGCS2P54868 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGCS2P54868 AL121603.2-201ENST00000557373 2117 ntBASIC23.27■■□□□ 1.32
HMGCS2P54868 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGCS2P54868 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGCS2P54868 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGCS2P54868 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGCS2P54868 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGCS2P54868 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC23.27■■□□□ 1.32
HMGCS2P54868 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC23.27■■□□□ 1.32
HMGCS2P54868 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
HMGCS2P54868 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
HMGCS2P54868 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.26■■□□□ 1.31
HMGCS2P54868 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGCS2P54868 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGCS2P54868 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
HMGCS2P54868 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC23.26■■□□□ 1.31
HMGCS2P54868 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC23.26■■□□□ 1.31
HMGCS2P54868 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.26■■□□□ 1.31
HMGCS2P54868 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC23.26■■□□□ 1.31
HMGCS2P54868 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGCS2P54868 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC23.26■■□□□ 1.31
HMGCS2P54868 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HMGCS2P54868 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HMGCS2P54868 UNC93B2-201ENST00000285383 730 ntBASIC23.25■■□□□ 1.31
HMGCS2P54868 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.25■■□□□ 1.31
HMGCS2P54868 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC23.25■■□□□ 1.31
HMGCS2P54868 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC23.25■■□□□ 1.31
HMGCS2P54868 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC23.25■■□□□ 1.31
HMGCS2P54868 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.25■■□□□ 1.31
HMGCS2P54868 AL031963.3-201ENST00000606441 850 ntBASIC23.25■■□□□ 1.31
HMGCS2P54868 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC23.25■■□□□ 1.31
HMGCS2P54868 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
HMGCS2P54868 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.25■■□□□ 1.31
HMGCS2P54868 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
HMGCS2P54868 KRT8P20-201ENST00000423953 1409 ntBASIC23.25■■□□□ 1.31
HMGCS2P54868 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HMGCS2P54868 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.24■■□□□ 1.31
HMGCS2P54868 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.24■■□□□ 1.31
HMGCS2P54868 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 AC145285.6-201ENST00000604632 637 ntBASIC23.24■■□□□ 1.31
HMGCS2P54868 AL445228.2-201ENST00000605589 952 ntBASIC23.24■■□□□ 1.31
HMGCS2P54868 CR392000.1-201ENST00000624770 1228 ntBASIC23.24■■□□□ 1.31
HMGCS2P54868 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
HMGCS2P54868 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.23■■□□□ 1.31
HMGCS2P54868 MIR1238-201ENST00000408483 83 ntBASIC23.23■■□□□ 1.31
HMGCS2P54868 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms