Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 KRT8P10-201ENST00000450021 1447 ntBASIC23.35■■□□□ 1.33
CTCFP49711 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
CTCFP49711 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC23.35■■□□□ 1.33
CTCFP49711 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.35■■□□□ 1.33
CTCFP49711 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
CTCFP49711 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC23.35■■□□□ 1.33
CTCFP49711 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC23.35■■□□□ 1.33
CTCFP49711 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
CTCFP49711 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.35■■□□□ 1.33
CTCFP49711 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
CTCFP49711 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.34■■□□□ 1.33
CTCFP49711 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC23.34■■□□□ 1.33
CTCFP49711 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
CTCFP49711 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC23.34■■□□□ 1.33
CTCFP49711 AC092068.2-201ENST00000590491 1708 ntBASIC23.34■■□□□ 1.33
CTCFP49711 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.34■■□□□ 1.33
CTCFP49711 INGX-201ENST00000359239 846 ntBASIC23.34■■□□□ 1.33
CTCFP49711 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
CTCFP49711 PRR31-201ENST00000371629 978 ntTSL 2 BASIC23.34■■□□□ 1.33
CTCFP49711 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC23.34■■□□□ 1.33
CTCFP49711 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC23.34■■□□□ 1.33
CTCFP49711 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC23.34■■□□□ 1.33
CTCFP49711 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC23.34■■□□□ 1.33
CTCFP49711 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CTCFP49711 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC23.34■■□□□ 1.33
CTCFP49711 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CTCFP49711 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CTCFP49711 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CTCFP49711 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC23.34■■□□□ 1.33
CTCFP49711 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CTCFP49711 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC23.33■■□□□ 1.33
CTCFP49711 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CTCFP49711 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
CTCFP49711 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTCFP49711 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CTCFP49711 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTCFP49711 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
CTCFP49711 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTCFP49711 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
CTCFP49711 FSCN1P1-201ENST00000568912 1481 ntBASIC23.33■■□□□ 1.33
CTCFP49711 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTCFP49711 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC23.33■■□□□ 1.33
CTCFP49711 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC23.33■■□□□ 1.33
CTCFP49711 KRT17P6-201ENST00000453795 1220 ntBASIC23.33■■□□□ 1.33
CTCFP49711 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC23.33■■□□□ 1.33
CTCFP49711 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC23.33■■□□□ 1.33
CTCFP49711 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC23.33■■□□□ 1.33
CTCFP49711 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC23.33■■□□□ 1.33
CTCFP49711 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC23.33■■□□□ 1.33
CTCFP49711 SLC25A1P4-201ENST00000567977 778 ntBASIC23.33■■□□□ 1.33
CTCFP49711 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTCFP49711 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CTCFP49711 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.33■■□□□ 1.32
CTCFP49711 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CTCFP49711 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC23.33■■□□□ 1.32
CTCFP49711 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CTCFP49711 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTCFP49711 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTCFP49711 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CTCFP49711 AC004870.1-201ENST00000315132 882 ntBASIC23.32■■□□□ 1.32
CTCFP49711 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
CTCFP49711 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC23.32■■□□□ 1.32
CTCFP49711 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC23.32■■□□□ 1.32
CTCFP49711 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CTCFP49711 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC23.32■■□□□ 1.32
CTCFP49711 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CTCFP49711 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTCFP49711 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTCFP49711 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTCFP49711 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTCFP49711 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CTCFP49711 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.31■■□□□ 1.32
CTCFP49711 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CTCFP49711 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC23.31■■□□□ 1.32
CTCFP49711 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC23.31■■□□□ 1.32
CTCFP49711 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC23.31■■□□□ 1.32
CTCFP49711 AL671277.2-201ENST00000458060 996 ntBASIC23.31■■□□□ 1.32
CTCFP49711 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CTCFP49711 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC23.31■■□□□ 1.32
CTCFP49711 AL031985.4-201ENST00000642138 673 ntBASIC23.31■■□□□ 1.32
CTCFP49711 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.31■■□□□ 1.32
CTCFP49711 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CTCFP49711 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CTCFP49711 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.3■■□□□ 1.32
CTCFP49711 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC23.3■■□□□ 1.32
CTCFP49711 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC23.3■■□□□ 1.32
CTCFP49711 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CTCFP49711 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CTCFP49711 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CTCFP49711 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.3■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms