Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.25■□□□□ 0.83
RPA3P35244 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.25■□□□□ 0.83
RPA3P35244 SLC7A5P2-201ENST00000553010 536 ntBASIC20.25■□□□□ 0.83
RPA3P35244 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.25■□□□□ 0.83
RPA3P35244 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.25■□□□□ 0.83
RPA3P35244 AC022517.1-201ENST00000592429 346 ntBASIC20.25■□□□□ 0.83
RPA3P35244 UBE2DNL-204ENST00000602536 740 ntBASIC20.25■□□□□ 0.83
RPA3P35244 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPA3P35244 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPA3P35244 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.25■□□□□ 0.83
RPA3P35244 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPA3P35244 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
RPA3P35244 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.24■□□□□ 0.83
RPA3P35244 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RPA3P35244 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPA3P35244 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPA3P35244 AL691432.2-201ENST00000607222 2038 ntBASIC20.24■□□□□ 0.83
RPA3P35244 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
RPA3P35244 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.24■□□□□ 0.83
RPA3P35244 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.24■□□□□ 0.83
RPA3P35244 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RPA3P35244 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
RPA3P35244 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPA3P35244 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.24■□□□□ 0.83
RPA3P35244 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RPA3P35244 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPA3P35244 KRT16P2-201ENST00000414673 1423 ntBASIC20.24■□□□□ 0.83
RPA3P35244 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.24■□□□□ 0.83
RPA3P35244 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RPA3P35244 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPA3P35244 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RPA3P35244 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
RPA3P35244 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
RPA3P35244 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.23■□□□□ 0.83
RPA3P35244 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.23■□□□□ 0.83
RPA3P35244 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.23■□□□□ 0.83
RPA3P35244 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPA3P35244 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.23■□□□□ 0.83
RPA3P35244 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.23■□□□□ 0.83
RPA3P35244 KRT18P11-201ENST00000435214 1283 ntBASIC20.23■□□□□ 0.83
RPA3P35244 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RPA3P35244 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.23■□□□□ 0.83
RPA3P35244 TNXA-203ENST00000507684 2038 ntBASIC20.23■□□□□ 0.83
RPA3P35244 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.23■□□□□ 0.83
RPA3P35244 AC005332.7-201ENST00000614046 2005 ntBASIC20.23■□□□□ 0.83
RPA3P35244 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.23■□□□□ 0.83
RPA3P35244 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPA3P35244 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.23■□□□□ 0.83
RPA3P35244 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPA3P35244 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPA3P35244 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RPA3P35244 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RPA3P35244 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.22■□□□□ 0.83
RPA3P35244 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
RPA3P35244 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 AC004408.2-201ENST00000623613 2777 ntBASIC20.22■□□□□ 0.83
RPA3P35244 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.22■□□□□ 0.83
RPA3P35244 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.22■□□□□ 0.83
RPA3P35244 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPA3P35244 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.22■□□□□ 0.83
RPA3P35244 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
RPA3P35244 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.21■□□□□ 0.83
RPA3P35244 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.21■□□□□ 0.83
RPA3P35244 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.21■□□□□ 0.83
RPA3P35244 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.21■□□□□ 0.83
RPA3P35244 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.21■□□□□ 0.83
RPA3P35244 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.21■□□□□ 0.83
RPA3P35244 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPA3P35244 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.21■□□□□ 0.83
RPA3P35244 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
RPA3P35244 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RPA3P35244 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.2■□□□□ 0.82
RPA3P35244 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPA3P35244 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPA3P35244 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.2■□□□□ 0.82
RPA3P35244 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.2■□□□□ 0.82
RPA3P35244 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPA3P35244 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms