Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
CLIP1P30622 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC32■■■□□ 2.71
CLIP1P30622 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC32■■■□□ 2.71
CLIP1P30622 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC32■■■□□ 2.71
CLIP1P30622 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CLIP1P30622 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC31.99■■■□□ 2.71
CLIP1P30622 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CLIP1P30622 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
CLIP1P30622 AC012618.2-201ENST00000428058 849 ntBASIC31.99■■■□□ 2.71
CLIP1P30622 SNORA78-201ENST00000459373 127 ntBASIC31.99■■■□□ 2.71
CLIP1P30622 MAX-217ENST00000557277 728 ntTSL 3 BASIC31.99■■■□□ 2.71
CLIP1P30622 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
CLIP1P30622 Z99916.2-201ENST00000604037 246 ntBASIC31.99■■■□□ 2.71
CLIP1P30622 AC073912.3-201ENST00000624414 853 ntBASIC31.99■■■□□ 2.71
CLIP1P30622 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC31.99■■■□□ 2.71
CLIP1P30622 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CLIP1P30622 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CLIP1P30622 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC31.98■■■□□ 2.71
CLIP1P30622 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC31.98■■■□□ 2.71
CLIP1P30622 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CLIP1P30622 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CLIP1P30622 HLA-G-202ENST00000376815 851 ntBASIC31.98■■■□□ 2.71
CLIP1P30622 HLA-G-203ENST00000376818 1127 ntBASIC31.98■■■□□ 2.71
CLIP1P30622 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CLIP1P30622 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC31.98■■■□□ 2.71
CLIP1P30622 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CLIP1P30622 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC31.98■■■□□ 2.71
CLIP1P30622 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CLIP1P30622 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CLIP1P30622 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CLIP1P30622 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CLIP1P30622 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC31.97■■■□□ 2.71
CLIP1P30622 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC31.97■■■□□ 2.71
CLIP1P30622 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CLIP1P30622 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
CLIP1P30622 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC31.97■■■□□ 2.71
CLIP1P30622 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CLIP1P30622 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC31.97■■■□□ 2.71
CLIP1P30622 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
CLIP1P30622 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC31.97■■■□□ 2.71
CLIP1P30622 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC31.96■■■□□ 2.71
CLIP1P30622 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CLIP1P30622 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CLIP1P30622 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC31.96■■■□□ 2.71
CLIP1P30622 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC31.96■■■□□ 2.71
CLIP1P30622 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC31.96■■■□□ 2.71
CLIP1P30622 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC31.96■■■□□ 2.71
CLIP1P30622 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC31.96■■■□□ 2.71
CLIP1P30622 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC31.96■■■□□ 2.71
CLIP1P30622 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC31.96■■■□□ 2.71
CLIP1P30622 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CLIP1P30622 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC31.96■■■□□ 2.71
CLIP1P30622 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CLIP1P30622 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CLIP1P30622 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
CLIP1P30622 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC31.95■■■□□ 2.71
CLIP1P30622 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC31.95■■■□□ 2.71
CLIP1P30622 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
CLIP1P30622 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
CLIP1P30622 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC31.95■■■□□ 2.7
CLIP1P30622 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CLIP1P30622 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CLIP1P30622 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CLIP1P30622 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CLIP1P30622 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC31.94■■■□□ 2.7
CLIP1P30622 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC31.94■■■□□ 2.7
CLIP1P30622 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CLIP1P30622 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC31.94■■■□□ 2.7
CLIP1P30622 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC31.94■■■□□ 2.7
CLIP1P30622 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC31.94■■■□□ 2.7
CLIP1P30622 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC31.94■■■□□ 2.7
CLIP1P30622 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
CLIP1P30622 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
CLIP1P30622 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
CLIP1P30622 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC31.93■■■□□ 2.7
CLIP1P30622 TREX2-204ENST00000370212 861 ntTSL 5 BASIC31.93■■■□□ 2.7
CLIP1P30622 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
CLIP1P30622 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC31.93■■■□□ 2.7
CLIP1P30622 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CLIP1P30622 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC31.93■■■□□ 2.7
CLIP1P30622 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC31.93■■■□□ 2.7
CLIP1P30622 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
CLIP1P30622 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC31.92■■■□□ 2.7
CLIP1P30622 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC31.92■■■□□ 2.7
CLIP1P30622 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC31.92■■■□□ 2.7
CLIP1P30622 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CLIP1P30622 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC31.92■■■□□ 2.7
CLIP1P30622 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
CLIP1P30622 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC31.92■■■□□ 2.7
CLIP1P30622 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC31.92■■■□□ 2.7
CLIP1P30622 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CLIP1P30622 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
CLIP1P30622 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC31.92■■■□□ 2.7
CLIP1P30622 AC110285.5-201ENST00000611501 352 ntBASIC31.92■■■□□ 2.7
CLIP1P30622 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC31.91■■■□□ 2.7
CLIP1P30622 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC31.91■■■□□ 2.7
CLIP1P30622 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
CLIP1P30622 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
CLIP1P30622 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC31.91■■■□□ 2.7
CLIP1P30622 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC31.91■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms