Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
PCNAP12004 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.52■□□□□ 0.72
PCNAP12004 AC069236.1-201ENST00000604339 616 ntBASIC19.52■□□□□ 0.72
PCNAP12004 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PCNAP12004 AL356652.1-201ENST00000615962 565 ntBASIC19.52■□□□□ 0.72
PCNAP12004 AC008694.1-202ENST00000636953 945 ntBASIC19.52■□□□□ 0.72
PCNAP12004 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.52■□□□□ 0.72
PCNAP12004 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCNAP12004 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCNAP12004 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.52■□□□□ 0.72
PCNAP12004 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PCNAP12004 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PCNAP12004 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PCNAP12004 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
PCNAP12004 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PCNAP12004 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
PCNAP12004 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.51■□□□□ 0.71
PCNAP12004 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
PCNAP12004 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.51■□□□□ 0.71
PCNAP12004 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.51■□□□□ 0.71
PCNAP12004 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
PCNAP12004 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.51■□□□□ 0.71
PCNAP12004 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.51■□□□□ 0.71
PCNAP12004 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.51■□□□□ 0.71
PCNAP12004 SMG8-203ENST00000578922 2178 ntBASIC19.51■□□□□ 0.71
PCNAP12004 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.51■□□□□ 0.71
PCNAP12004 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
PCNAP12004 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCNAP12004 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
PCNAP12004 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.5■□□□□ 0.71
PCNAP12004 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
PCNAP12004 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.5■□□□□ 0.71
PCNAP12004 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.5■□□□□ 0.71
PCNAP12004 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.5■□□□□ 0.71
PCNAP12004 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.5■□□□□ 0.71
PCNAP12004 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.5■□□□□ 0.71
PCNAP12004 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 AC080038.1-201ENST00000611274 1154 ntBASIC19.5■□□□□ 0.71
PCNAP12004 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
PCNAP12004 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
PCNAP12004 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.5■□□□□ 0.71
PCNAP12004 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
PCNAP12004 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PCNAP12004 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCNAP12004 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.49■□□□□ 0.71
PCNAP12004 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PCNAP12004 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PCNAP12004 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCNAP12004 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PCNAP12004 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.49■□□□□ 0.71
PCNAP12004 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.49■□□□□ 0.71
PCNAP12004 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.49■□□□□ 0.71
PCNAP12004 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PCNAP12004 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCNAP12004 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCNAP12004 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCNAP12004 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.49■□□□□ 0.71
PCNAP12004 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.49■□□□□ 0.71
PCNAP12004 DPP3P2-201ENST00000416030 1696 ntBASIC19.49■□□□□ 0.71
PCNAP12004 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCNAP12004 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PCNAP12004 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
PCNAP12004 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
PCNAP12004 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PCNAP12004 MCRIP2P1-201ENST00000394346 511 ntBASIC19.48■□□□□ 0.71
PCNAP12004 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.48■□□□□ 0.71
PCNAP12004 AC005181.1-201ENST00000604782 1256 ntBASIC19.48■□□□□ 0.71
PCNAP12004 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.48■□□□□ 0.71
PCNAP12004 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.48■□□□□ 0.71
PCNAP12004 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.48■□□□□ 0.71
PCNAP12004 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
PCNAP12004 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCNAP12004 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms