Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.53■□□□□ 0.88
TOP3BO95985 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 EEF1DP3-203ENST00000566025 782 ntBASIC20.53■□□□□ 0.88
TOP3BO95985 Z99916.2-201ENST00000604037 246 ntBASIC20.53■□□□□ 0.88
TOP3BO95985 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.53■□□□□ 0.88
TOP3BO95985 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TOP3BO95985 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.53■□□□□ 0.88
TOP3BO95985 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
TOP3BO95985 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
TOP3BO95985 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.52■□□□□ 0.88
TOP3BO95985 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
TOP3BO95985 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 SNORA78-201ENST00000459373 127 ntBASIC20.52■□□□□ 0.88
TOP3BO95985 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.52■□□□□ 0.88
TOP3BO95985 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.52■□□□□ 0.88
TOP3BO95985 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.52■□□□□ 0.88
TOP3BO95985 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.52■□□□□ 0.88
TOP3BO95985 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
TOP3BO95985 AC007952.6-201ENST00000573168 2673 ntBASIC20.52■□□□□ 0.88
TOP3BO95985 AC003957.1-201ENST00000625108 2673 ntBASIC20.52■□□□□ 0.88
TOP3BO95985 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TOP3BO95985 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TOP3BO95985 AL162377.1-201ENST00000618844 1793 ntBASIC20.51■□□□□ 0.87
TOP3BO95985 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TOP3BO95985 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TOP3BO95985 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TOP3BO95985 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TOP3BO95985 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TOP3BO95985 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TOP3BO95985 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.51■□□□□ 0.87
TOP3BO95985 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TOP3BO95985 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TOP3BO95985 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TOP3BO95985 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
TOP3BO95985 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
TOP3BO95985 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.51■□□□□ 0.87
TOP3BO95985 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.51■□□□□ 0.87
TOP3BO95985 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.51■□□□□ 0.87
TOP3BO95985 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.51■□□□□ 0.87
TOP3BO95985 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TOP3BO95985 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.51■□□□□ 0.87
TOP3BO95985 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.51■□□□□ 0.87
TOP3BO95985 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TOP3BO95985 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TOP3BO95985 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.51■□□□□ 0.87
TOP3BO95985 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
TOP3BO95985 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TOP3BO95985 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TOP3BO95985 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TOP3BO95985 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TOP3BO95985 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TOP3BO95985 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TOP3BO95985 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TOP3BO95985 MIR718-201ENST00000390190 70 ntBASIC20.5■□□□□ 0.87
TOP3BO95985 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
TOP3BO95985 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TOP3BO95985 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.5■□□□□ 0.87
TOP3BO95985 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.5■□□□□ 0.87
TOP3BO95985 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TOP3BO95985 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.5■□□□□ 0.87
TOP3BO95985 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TOP3BO95985 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
TOP3BO95985 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.5■□□□□ 0.87
TOP3BO95985 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TOP3BO95985 AC099778.1-201ENST00000568593 1911 ntBASIC20.49■□□□□ 0.87
TOP3BO95985 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TOP3BO95985 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
TOP3BO95985 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TOP3BO95985 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TOP3BO95985 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TOP3BO95985 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TOP3BO95985 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms