Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA1O95477 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA1O95477 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA1O95477 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ABCA1O95477 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.82■□□□□ 0.28
ABCA1O95477 CD177P1-201ENST00000606252 935 ntBASIC16.82■□□□□ 0.28
ABCA1O95477 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.82■□□□□ 0.28
ABCA1O95477 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
ABCA1O95477 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA1O95477 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA1O95477 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA1O95477 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
ABCA1O95477 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA1O95477 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.82■□□□□ 0.28
ABCA1O95477 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ABCA1O95477 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ABCA1O95477 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.81■□□□□ 0.28
ABCA1O95477 KRT8P9-201ENST00000558927 1449 ntBASIC16.81■□□□□ 0.28
ABCA1O95477 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
ABCA1O95477 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC16.81■□□□□ 0.28
ABCA1O95477 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ABCA1O95477 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.81■□□□□ 0.28
ABCA1O95477 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
ABCA1O95477 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
ABCA1O95477 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.81■□□□□ 0.28
ABCA1O95477 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 AL356652.1-201ENST00000615962 565 ntBASIC16.81■□□□□ 0.28
ABCA1O95477 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ABCA1O95477 AC092865.7-201ENST00000641832 219 ntBASIC16.81■□□□□ 0.28
ABCA1O95477 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.81■□□□□ 0.28
ABCA1O95477 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC16.81■□□□□ 0.28
ABCA1O95477 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.81■□□□□ 0.28
ABCA1O95477 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.81■□□□□ 0.28
ABCA1O95477 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ABCA1O95477 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC16.8■□□□□ 0.28
ABCA1O95477 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA1O95477 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA1O95477 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA1O95477 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.8■□□□□ 0.28
ABCA1O95477 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA1O95477 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA1O95477 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.8■□□□□ 0.28
ABCA1O95477 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA1O95477 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA1O95477 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA1O95477 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ABCA1O95477 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA1O95477 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA1O95477 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ABCA1O95477 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA1O95477 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ABCA1O95477 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA1O95477 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.8■□□□□ 0.28
ABCA1O95477 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA1O95477 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA1O95477 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.8■□□□□ 0.28
ABCA1O95477 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA1O95477 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ABCA1O95477 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.8■□□□□ 0.28
ABCA1O95477 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA1O95477 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA1O95477 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.79■□□□□ 0.28
ABCA1O95477 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.79■□□□□ 0.28
ABCA1O95477 AL049597.2-201ENST00000565575 961 ntBASIC16.79■□□□□ 0.28
ABCA1O95477 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
ABCA1O95477 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA1O95477 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.79■□□□□ 0.28
ABCA1O95477 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
ABCA1O95477 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.78■□□□□ 0.28
ABCA1O95477 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA1O95477 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms