Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX3O95343 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX3O95343 AC016769.1-201ENST00000409132 1010 ntBASIC19.63■□□□□ 0.73
SIX3O95343 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SIX3O95343 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX3O95343 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.63■□□□□ 0.73
SIX3O95343 DUX4L16-201ENST00000555130 1264 ntBASIC19.63■□□□□ 0.73
SIX3O95343 RARRES2P6-201ENST00000567333 442 ntBASIC19.63■□□□□ 0.73
SIX3O95343 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SIX3O95343 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.63■□□□□ 0.73
SIX3O95343 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX3O95343 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SIX3O95343 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SIX3O95343 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
SIX3O95343 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX3O95343 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.62■□□□□ 0.73
SIX3O95343 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.62■□□□□ 0.73
SIX3O95343 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX3O95343 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.62■□□□□ 0.73
SIX3O95343 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
SIX3O95343 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.61■□□□□ 0.73
SIX3O95343 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX3O95343 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX3O95343 AC068338.2-201ENST00000563278 1430 ntBASIC19.61■□□□□ 0.73
SIX3O95343 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX3O95343 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SIX3O95343 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX3O95343 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SIX3O95343 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.61■□□□□ 0.73
SIX3O95343 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SIX3O95343 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX3O95343 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX3O95343 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX3O95343 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.61■□□□□ 0.73
SIX3O95343 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SIX3O95343 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SIX3O95343 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SIX3O95343 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX3O95343 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX3O95343 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SIX3O95343 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX3O95343 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX3O95343 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX3O95343 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX3O95343 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX3O95343 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.6■□□□□ 0.73
SIX3O95343 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX3O95343 AC006015.1-201ENST00000429970 570 ntBASIC19.6■□□□□ 0.73
SIX3O95343 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX3O95343 RARRES2P4-201ENST00000514074 484 ntBASIC19.6■□□□□ 0.73
SIX3O95343 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.6■□□□□ 0.73
SIX3O95343 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SIX3O95343 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SIX3O95343 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SIX3O95343 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
SIX3O95343 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SIX3O95343 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.59■□□□□ 0.73
SIX3O95343 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SIX3O95343 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.59■□□□□ 0.73
SIX3O95343 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.59■□□□□ 0.73
SIX3O95343 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.59■□□□□ 0.73
SIX3O95343 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.59■□□□□ 0.73
SIX3O95343 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.59■□□□□ 0.73
SIX3O95343 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.59■□□□□ 0.73
SIX3O95343 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SIX3O95343 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SIX3O95343 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SIX3O95343 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
SIX3O95343 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SIX3O95343 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.58■□□□□ 0.72
SIX3O95343 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SIX3O95343 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
SIX3O95343 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SIX3O95343 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SIX3O95343 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX3O95343 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.58■□□□□ 0.72
SIX3O95343 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.58■□□□□ 0.72
SIX3O95343 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX3O95343 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.58■□□□□ 0.72
SIX3O95343 PTBP1P-201ENST00000554374 1601 ntBASIC19.58■□□□□ 0.72
SIX3O95343 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SIX3O95343 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms