Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC34.65■■■■□ 3.14
CUX2O14529 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC34.65■■■■□ 3.14
CUX2O14529 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 AL845331.1-201ENST00000424978 1190 ntBASIC34.65■■■■□ 3.14
CUX2O14529 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC34.65■■■■□ 3.14
CUX2O14529 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC34.65■■■■□ 3.14
CUX2O14529 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC34.65■■■■□ 3.14
CUX2O14529 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC34.64■■■■□ 3.14
CUX2O14529 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC34.64■■■■□ 3.14
CUX2O14529 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 AC010542.4-201ENST00000563151 1910 ntBASIC34.64■■■■□ 3.14
CUX2O14529 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC34.64■■■■□ 3.14
CUX2O14529 CD70-202ENST00000423145 881 ntTSL 2 BASIC34.64■■■■□ 3.14
CUX2O14529 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC34.64■■■■□ 3.14
CUX2O14529 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC34.64■■■■□ 3.14
CUX2O14529 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC34.63■■■■□ 3.13
CUX2O14529 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC34.63■■■■□ 3.13
CUX2O14529 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC34.63■■■■□ 3.13
CUX2O14529 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC34.63■■■■□ 3.13
CUX2O14529 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC34.63■■■■□ 3.13
CUX2O14529 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC34.63■■■■□ 3.13
CUX2O14529 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC34.63■■■■□ 3.13
CUX2O14529 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC34.63■■■■□ 3.13
CUX2O14529 AC124283.5-201ENST00000624661 1809 ntBASIC34.63■■■■□ 3.13
CUX2O14529 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC34.63■■■■□ 3.13
CUX2O14529 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
CUX2O14529 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC34.62■■■■□ 3.13
CUX2O14529 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC34.62■■■■□ 3.13
CUX2O14529 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC34.62■■■■□ 3.13
CUX2O14529 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
CUX2O14529 NPAP1P7-201ENST00000613027 823 ntBASIC34.62■■■■□ 3.13
CUX2O14529 AC011558.1-201ENST00000623459 338 ntBASIC34.62■■■■□ 3.13
CUX2O14529 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC34.62■■■■□ 3.13
CUX2O14529 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
CUX2O14529 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC34.62■■■■□ 3.13
CUX2O14529 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
CUX2O14529 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
CUX2O14529 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
CUX2O14529 B3GAT3P1-201ENST00000471720 806 ntBASIC34.61■■■■□ 3.13
CUX2O14529 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC34.61■■■■□ 3.13
CUX2O14529 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC34.61■■■■□ 3.13
CUX2O14529 AL136038.3-201ENST00000561909 1096 ntBASIC34.61■■■■□ 3.13
CUX2O14529 AL671883.3-201ENST00000603274 991 ntBASIC34.61■■■■□ 3.13
CUX2O14529 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC34.61■■■■□ 3.13
CUX2O14529 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC34.61■■■■□ 3.13
CUX2O14529 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
CUX2O14529 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC34.6■■■■□ 3.13
CUX2O14529 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC34.6■■■■□ 3.13
CUX2O14529 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
CUX2O14529 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC34.6■■■■□ 3.13
CUX2O14529 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
CUX2O14529 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC34.6■■■■□ 3.13
CUX2O14529 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
CUX2O14529 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC34.6■■■■□ 3.13
CUX2O14529 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC34.59■■■■□ 3.13
CUX2O14529 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC34.59■■■■□ 3.13
CUX2O14529 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC34.59■■■■□ 3.13
CUX2O14529 AC009078.2-202ENST00000463353 338 ntBASIC34.59■■■■□ 3.13
CUX2O14529 VENTXP5-201ENST00000523979 775 ntBASIC34.59■■■■□ 3.13
CUX2O14529 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC34.59■■■■□ 3.13
CUX2O14529 PRELID1P1-202ENST00000567272 903 ntBASIC34.59■■■■□ 3.13
CUX2O14529 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC34.59■■■■□ 3.13
CUX2O14529 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC34.59■■■■□ 3.13
CUX2O14529 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
CUX2O14529 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC34.59■■■■□ 3.13
CUX2O14529 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC34.59■■■■□ 3.13
CUX2O14529 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC34.59■■■■□ 3.13
CUX2O14529 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
CUX2O14529 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC34.58■■■■□ 3.13
CUX2O14529 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC34.58■■■■□ 3.13
CUX2O14529 AC141257.4-201ENST00000634557 245 ntBASIC34.58■■■■□ 3.13
CUX2O14529 AC136944.6-201ENST00000634818 245 ntBASIC34.58■■■■□ 3.13
CUX2O14529 NARF-205ENST00000412079 1760 ntTSL 5 BASIC34.58■■■■□ 3.13
CUX2O14529 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC34.58■■■■□ 3.13
CUX2O14529 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
CUX2O14529 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC34.58■■■■□ 3.13
CUX2O14529 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC34.58■■■■□ 3.13
CUX2O14529 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC34.58■■■■□ 3.13
CUX2O14529 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC34.58■■■■□ 3.13
CUX2O14529 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC34.58■■■■□ 3.13
CUX2O14529 AC080038.3-201ENST00000623346 1952 ntBASIC34.58■■■■□ 3.13
CUX2O14529 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
CUX2O14529 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC34.57■■■■□ 3.13
CUX2O14529 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC34.57■■■■□ 3.12
CUX2O14529 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC34.57■■■■□ 3.12
CUX2O14529 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC34.57■■■■□ 3.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms