Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 LIN28AP1-201ENST00000429574 405 ntBASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 EGLN1P1-201ENST00000531623 762 ntBASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 AC087388.1-201ENST00000571370 1112 ntBASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CCDC163A0A0D9SF12 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
CCDC163A0A0D9SF12 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.95■□□□□ 0.79
CCDC163A0A0D9SF12 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 TSPY14P-201ENST00000303979 915 ntBASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 AL445675.2-201ENST00000620291 557 ntBASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC163A0A0D9SF12 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC163A0A0D9SF12 KRT8P20-201ENST00000423953 1409 ntBASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 AC010203.1-204ENST00000548782 407 ntBASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC163A0A0D9SF12 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 PTBP1P-201ENST00000554374 1601 ntBASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 ATP5G1P1-201ENST00000448724 379 ntBASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 AC128688.1-201ENST00000487626 519 ntBASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 LINC01238-205ENST00000567549 1107 ntBASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 C1QL1P1-201ENST00000568105 661 ntBASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC163A0A0D9SF12 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC163A0A0D9SF12 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms