Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MTMR2-204ENST00000409459 3420 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 LINC01550-202ENST00000502187 2455 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 CHI3L2-204ENST00000466741 1518 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 ZNF366-201ENST00000318442 3830 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 SP2-AS1-201ENST00000411573 1738 ntTSL 2 BASIC8.23□□□□□ -1.09
MSX1P28360 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 HCRTR2-202ENST00000615358 1936 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 ANKFY1-209ENST00000574367 5033 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 BBS9-202ENST00000350941 3899 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 SLC30A8-202ENST00000456015 2520 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 AC079331.2-201ENST00000623462 2546 ntBASIC8.23□□□□□ -1.09
MSX1P28360 PPP1R12A-213ENST00000550107 2925 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSX1P28360 ZNF195-203ENST00000343338 3145 ntAPPRIS ALT2 TSL 4 BASIC8.23□□□□□ -1.09
MSX1P28360 DIO2-201ENST00000422005 6272 ntTSL 5 BASIC8.23□□□□□ -1.09
MSX1P28360 DEPDC1B-202ENST00000453022 1569 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 METTL7A-201ENST00000332160 3390 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 DHRS9-206ENST00000436483 1817 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 C8orf48-201ENST00000297324 1445 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
MSX1P28360 AL133268.1-201ENST00000405676 1401 ntBASIC8.22□□□□□ -1.09
MSX1P28360 COMMD3-BMI1-205ENST00000602390 1419 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 RBBP8-205ENST00000399725 3260 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 LINC00870-202ENST00000473713 2693 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 LUCAT1-203ENST00000513626 2672 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 MRNIP-204ENST00000518219 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 AC105233.5-202ENST00000642083 4132 ntBASIC8.22□□□□□ -1.09
MSX1P28360 PLEKHG4B-204ENST00000637938 12612 ntAPPRIS ALT2 TSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 ITM2A-202ENST00000434584 1698 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 LDB2-201ENST00000304523 2548 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 CDYLP1-201ENST00000419017 1458 ntBASIC8.22□□□□□ -1.09
MSX1P28360 PLA2G2C-201ENST00000247992 453 ntAPPRIS P5 TSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 AC211476.4-201ENST00000275546 699 ntBASIC8.22□□□□□ -1.09
MSX1P28360 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
MSX1P28360 SNORD116.1-201ENST00000365628 92 ntBASIC8.22□□□□□ -1.09
MSX1P28360 Y_RNA.560-201ENST00000384689 102 ntBASIC8.22□□□□□ -1.09
MSX1P28360 SNORA26.8-201ENST00000391306 124 ntBASIC8.22□□□□□ -1.09
MSX1P28360 PMS2P5-201ENST00000398065 516 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AL031577.2-201ENST00000404133 280 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AL023773.2-201ENST00000412173 1005 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AC099560.1-201ENST00000412811 500 ntTSL 4 BASIC8.22□□□□□ -1.09
MSX1P28360 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 LINCMD1-201ENST00000418518 462 ntTSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 AL032821.1-201ENST00000430895 581 ntTSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 MRPL35P2-201ENST00000448009 511 ntBASIC8.22□□□□□ -1.09
MSX1P28360 RPL31P20-201ENST00000449593 360 ntBASIC8.22□□□□□ -1.09
MSX1P28360 POLR2CP1-201ENST00000453699 765 ntBASIC8.22□□□□□ -1.09
MSX1P28360 RPL5P32-201ENST00000454085 879 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AL109741.2-201ENST00000455561 343 ntBASIC8.22□□□□□ -1.09
MSX1P28360 MPTX1-201ENST00000480235 609 ntBASIC8.22□□□□□ -1.09
MSX1P28360 HMGB1P36-201ENST00000487709 576 ntBASIC8.22□□□□□ -1.09
MSX1P28360 PTPRG-AS1-209ENST00000495542 502 ntTSL 4 BASIC8.22□□□□□ -1.09
MSX1P28360 PLA2G12AP1-201ENST00000497678 568 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC8.22□□□□□ -1.09
MSX1P28360 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC8.22□□□□□ -1.09
MSX1P28360 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC8.22□□□□□ -1.09
MSX1P28360 AC133963.2-201ENST00000513686 578 ntBASIC8.22□□□□□ -1.09
MSX1P28360 LINC00967-202ENST00000517725 259 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC8.22□□□□□ -1.09
MSX1P28360 AC124290.2-201ENST00000519431 286 ntBASIC8.22□□□□□ -1.09
MSX1P28360 OR5G1P-201ENST00000525221 946 ntBASIC8.22□□□□□ -1.09
MSX1P28360 ANKRD42-206ENST00000528722 954 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 AL139174.1-201ENST00000531489 886 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AC005842.1-201ENST00000537149 678 ntTSL 3 BASIC8.22□□□□□ -1.09
MSX1P28360 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC8.22□□□□□ -1.09
MSX1P28360 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 AL442663.4-201ENST00000555304 289 ntBASIC8.22□□□□□ -1.09
MSX1P28360 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 AC113146.1-201ENST00000558255 696 ntTSL 3 BASIC8.22□□□□□ -1.09
MSX1P28360 ANP32BP3-201ENST00000559213 706 ntBASIC8.22□□□□□ -1.09
MSX1P28360 MIR3972-201ENST00000582732 87 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AC023855.1-201ENST00000585899 359 ntTSL 4 BASIC8.22□□□□□ -1.09
MSX1P28360 AL354733.2-205ENST00000590813 621 ntTSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 AC004221.1-201ENST00000592843 844 ntTSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 ZNF780B-206ENST00000598845 401 ntTSL 3 BASIC8.22□□□□□ -1.09
MSX1P28360 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC8.22□□□□□ -1.09
MSX1P28360 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 AC004223.4-201ENST00000612426 332 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AC116003.3-201ENST00000612669 541 ntBASIC8.22□□□□□ -1.09
MSX1P28360 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AL590491.1-202ENST00000618038 394 ntBASIC8.22□□□□□ -1.09
MSX1P28360 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 AC092794.2-201ENST00000620933 563 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AC011472.5-201ENST00000624079 508 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AC005691.1-201ENST00000624723 401 ntBASIC8.22□□□□□ -1.09
MSX1P28360 AL139220.2-211ENST00000628234 754 ntTSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 AL596275.2-207ENST00000641188 675 ntBASIC8.22□□□□□ -1.09
MSX1P28360 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 SMIM7-208ENST00000487416 2776 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 ADAMTS3-201ENST00000286657 6409 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 MTF1-201ENST00000373036 7972 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 LINC01929-201ENST00000589125 3067 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 LDHB-201ENST00000350669 1303 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSX1P28360 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC8.22□□□□□ -1.09
MSX1P28360 PAX8-AS1-213ENST00000609210 1328 ntTSL 5 BASIC8.22□□□□□ -1.09
MSX1P28360 KCND1-202ENST00000376477 3306 ntTSL 2 BASIC8.22□□□□□ -1.09
MSX1P28360 WDR11-AS1-203ENST00000598981 2242 ntTSL 5 BASIC8.22□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms