Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 APOL1-205ENST00000422706 2901 ntAPPRIS ALT2 TSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 FER-209ENST00000618353 1420 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 AP000542.3-201ENST00000623391 6114 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AC091304.1-201ENST00000564897 3034 ntBASIC8.31□□□□□ -1.08
MSX1P28360 POP4-202ENST00000585603 3385 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 MDH1B-204ENST00000449792 1757 ntTSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 MDH1B-205ENST00000454776 1795 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 RND3-203ENST00000409557 2372 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 TPM3-201ENST00000271850 1219 ntAPPRIS ALT1 TSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 OR10G7-201ENST00000330487 936 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
MSX1P28360 RNU6-236P-201ENST00000363886 106 ntBASIC8.31□□□□□ -1.08
MSX1P28360 RNU4-51P-201ENST00000364206 140 ntBASIC8.31□□□□□ -1.08
MSX1P28360 RNU6-224P-201ENST00000384055 107 ntBASIC8.31□□□□□ -1.08
MSX1P28360 TDRKH-AS1-201ENST00000389897 992 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 RNU6-796P-201ENST00000391086 107 ntBASIC8.31□□□□□ -1.08
MSX1P28360 SNORA48.6-201ENST00000391156 130 ntBASIC8.31□□□□□ -1.08
MSX1P28360 U3.28-201ENST00000391249 210 ntBASIC8.31□□□□□ -1.08
MSX1P28360 RPS27-202ENST00000392558 625 ntTSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 SCIMP-201ENST00000399600 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 RSL24D1P4-201ENST00000400938 484 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AL139274.1-201ENST00000402374 936 ntBASIC8.31□□□□□ -1.08
MSX1P28360 SNORD88A-201ENST00000408314 91 ntBASIC8.31□□□□□ -1.08
MSX1P28360 RPL4P5-201ENST00000413888 1276 ntBASIC8.31□□□□□ -1.08
MSX1P28360 MTCYBP38-201ENST00000417160 1123 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AC008781.1-201ENST00000422040 621 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 ZDHHC20P2-201ENST00000424108 429 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AL137793.1-201ENST00000433734 599 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 MDC1-AS1-201ENST00000442150 738 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 AC138089.1-201ENST00000450847 967 ntTSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 ST13P18-201ENST00000456632 1027 ntBASIC8.31□□□□□ -1.08
MSX1P28360 MTCO3P38-201ENST00000468910 766 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AC017013.1-201ENST00000506459 799 ntBASIC8.31□□□□□ -1.08
MSX1P28360 OR5H4P-201ENST00000510851 923 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AC109471.1-201ENST00000511631 612 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 AP005435.2-201ENST00000525489 590 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 AP002963.1-201ENST00000530590 184 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 CXorf56-203ENST00000536133 1089 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 AC006206.2-201ENST00000537192 992 ntTSL 4 BASIC8.31□□□□□ -1.08
MSX1P28360 TMIGD1-202ENST00000538566 1124 ntTSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 ASB8-211ENST00000539528 839 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 AC078962.3-201ENST00000545821 482 ntTSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 MTCO1P2-201ENST00000554243 703 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AC004828.1-201ENST00000555303 654 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 AC245505.1-201ENST00000556398 224 ntBASIC8.31□□□□□ -1.08
MSX1P28360 OR11K1P-201ENST00000558299 904 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 AC099518.5-201ENST00000567236 1137 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 PDE6G-202ENST00000571004 458 ntAPPRIS P1 TSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 AC119751.8-201ENST00000597032 156 ntBASIC8.31□□□□□ -1.08
MSX1P28360 VN1R82P-201ENST00000601481 356 ntBASIC8.31□□□□□ -1.08
MSX1P28360 SLC25A6P5-202ENST00000602729 1038 ntBASIC8.31□□□□□ -1.08
MSX1P28360 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 SMIM11B-201ENST00000612624 1021 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 Metazoa_SRP.162-201ENST00000613066 277 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 AP003400.4-201ENST00000623832 399 ntBASIC8.31□□□□□ -1.08
MSX1P28360 AP000851.2-201ENST00000629499 721 ntTSL 3 BASIC8.31□□□□□ -1.08
MSX1P28360 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 USP15-202ENST00000312635 2226 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 DUSP3-201ENST00000226004 4110 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 FAM122B-206ENST00000486347 1381 ntAPPRIS P3 TSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 LRRC4C-203ENST00000528697 2650 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 ETV3-202ENST00000368192 5254 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 CEACAM1-204ENST00000358394 1484 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 FLT1-206ENST00000615611 1476 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 STXBP5L-204ENST00000471454 3813 ntAPPRIS ALT1 TSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 PCYT1B-203ENST00000379145 5307 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 PTCD3-201ENST00000254630 6734 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 MKL2-207ENST00000573051 1938 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 BX664727.3-202ENST00000421686 1761 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 RDH11-201ENST00000381346 2588 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 CDC27-204ENST00000527547 2579 ntAPPRIS ALT1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 LRRC4-201ENST00000249363 3828 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 PEG3-201ENST00000326441 8723 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 TFDP2-209ENST00000477292 1403 ntTSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 SBF2-201ENST00000256190 7439 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 PSMA5-206ENST00000538610 1504 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 FAM107B-206ENST00000378470 3316 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
MSX1P28360 PIGN-251ENST00000640876 6045 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 RPL23AP7-202ENST00000416673 2078 ntTSL 2 BASIC8.3□□□□□ -1.08
MSX1P28360 LINC02357-201ENST00000637313 1622 ntTSL 5 BASIC8.3□□□□□ -1.08
MSX1P28360 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
MSX1P28360 COX6C-201ENST00000297564 433 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms