Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LSM4Q9Y4Z0 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 AC116562.4-201ENST00000641316 2276 ntBASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 MFF-207ENST00000409565 1548 ntTSL 2 BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 AC083906.2-201ENST00000511578 360 ntBASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 CD99P1-205ENST00000527459 561 ntBASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 AL050303.2-201ENST00000619798 666 ntBASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 AC018445.3-201ENST00000624177 1945 ntBASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LSM4Q9Y4Z0 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 KRT87P-202ENST00000534226 1464 ntBASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 DUX4L16-201ENST00000555130 1264 ntBASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LSM4Q9Y4Z0 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 APTR-205ENST00000447009 902 ntTSL 2 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 TSPY6P-201ENST00000448518 926 ntBASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.04■□□□□ 0.16
LSM4Q9Y4Z0 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
LSM4Q9Y4Z0 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.03■□□□□ 0.16
LSM4Q9Y4Z0 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.03■□□□□ 0.16
LSM4Q9Y4Z0 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LSM4Q9Y4Z0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms