Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 FAM197Y4-202ENST00000622692 608 ntBASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 FP700111.2-201ENST00000619190 1892 ntBASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLCF1Q9UBD9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.91■□□□□ 0.46
CLCF1Q9UBD9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.9■□□□□ 0.46
CLCF1Q9UBD9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 AC007225.1-201ENST00000566331 1836 ntBASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 AC005229.4-201ENST00000610085 2198 ntBASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLCF1Q9UBD9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms