Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SCN3AQ9NY46 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN3AQ9NY46 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SCN3AQ9NY46 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SCN3AQ9NY46 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.08■□□□□ 0.64
SCN3AQ9NY46 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.64
SCN3AQ9NY46 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.08■□□□□ 0.64
SCN3AQ9NY46 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 AP003097.1-201ENST00000530657 1135 ntBASIC19.07■□□□□ 0.64
SCN3AQ9NY46 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 ABHD17AP1-201ENST00000358206 933 ntBASIC19.07■□□□□ 0.64
SCN3AQ9NY46 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 C2orf69P4-201ENST00000565394 541 ntBASIC19.07■□□□□ 0.64
SCN3AQ9NY46 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SCN3AQ9NY46 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 TSPY20P-201ENST00000450910 630 ntBASIC19.06■□□□□ 0.64
SCN3AQ9NY46 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 AC020907.5-201ENST00000624372 1936 ntBASIC19.06■□□□□ 0.64
SCN3AQ9NY46 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 AL691432.2-201ENST00000607222 2038 ntBASIC19.06■□□□□ 0.64
SCN3AQ9NY46 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SCN3AQ9NY46 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.05■□□□□ 0.64
SCN3AQ9NY46 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.04■□□□□ 0.64
SCN3AQ9NY46 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN3AQ9NY46 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms