Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC25.72■■□□□ 1.71
USP42Q9H9J4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC25.72■■□□□ 1.71
USP42Q9H9J4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP42Q9H9J4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC25.71■■□□□ 1.71
USP42Q9H9J4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC25.71■■□□□ 1.71
USP42Q9H9J4 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC25.71■■□□□ 1.71
USP42Q9H9J4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USP42Q9H9J4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
USP42Q9H9J4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
USP42Q9H9J4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
USP42Q9H9J4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
USP42Q9H9J4 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
USP42Q9H9J4 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC25.71■■□□□ 1.71
USP42Q9H9J4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
USP42Q9H9J4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC25.7■■□□□ 1.71
USP42Q9H9J4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC25.7■■□□□ 1.71
USP42Q9H9J4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC25.7■■□□□ 1.71
USP42Q9H9J4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
USP42Q9H9J4 AL024507.2-201ENST00000606070 2574 ntBASIC25.7■■□□□ 1.7
USP42Q9H9J4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC25.7■■□□□ 1.7
USP42Q9H9J4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC25.7■■□□□ 1.7
USP42Q9H9J4 SRI-203ENST00000419179 1307 ntTSL 2 BASIC25.7■■□□□ 1.7
USP42Q9H9J4 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC25.69■■□□□ 1.7
USP42Q9H9J4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC25.69■■□□□ 1.7
USP42Q9H9J4 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP42Q9H9J4 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP42Q9H9J4 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC25.69■■□□□ 1.7
USP42Q9H9J4 AL353807.1-201ENST00000427475 662 ntBASIC25.69■■□□□ 1.7
USP42Q9H9J4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC25.69■■□□□ 1.7
USP42Q9H9J4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
USP42Q9H9J4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC25.69■■□□□ 1.7
USP42Q9H9J4 AC145285.6-201ENST00000604632 637 ntBASIC25.69■■□□□ 1.7
USP42Q9H9J4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
USP42Q9H9J4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
USP42Q9H9J4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC25.69■■□□□ 1.7
USP42Q9H9J4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
USP42Q9H9J4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP42Q9H9J4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP42Q9H9J4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
USP42Q9H9J4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
USP42Q9H9J4 FAM197Y1-201ENST00000421178 764 ntBASIC25.68■■□□□ 1.7
USP42Q9H9J4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC25.68■■□□□ 1.7
USP42Q9H9J4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC25.68■■□□□ 1.7
USP42Q9H9J4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC25.68■■□□□ 1.7
USP42Q9H9J4 MIR6786-201ENST00000616843 113 ntBASIC25.68■■□□□ 1.7
USP42Q9H9J4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
USP42Q9H9J4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP42Q9H9J4 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP42Q9H9J4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
USP42Q9H9J4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC25.68■■□□□ 1.7
USP42Q9H9J4 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP42Q9H9J4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC25.67■■□□□ 1.7
USP42Q9H9J4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP42Q9H9J4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP42Q9H9J4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC25.67■■□□□ 1.7
USP42Q9H9J4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC25.67■■□□□ 1.7
USP42Q9H9J4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC25.67■■□□□ 1.7
USP42Q9H9J4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP42Q9H9J4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP42Q9H9J4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP42Q9H9J4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP42Q9H9J4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
USP42Q9H9J4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
USP42Q9H9J4 AC124283.5-201ENST00000624661 1809 ntBASIC25.67■■□□□ 1.7
USP42Q9H9J4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP42Q9H9J4 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
USP42Q9H9J4 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC25.66■■□□□ 1.7
USP42Q9H9J4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC25.66■■□□□ 1.7
USP42Q9H9J4 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP42Q9H9J4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
USP42Q9H9J4 AC092865.7-201ENST00000641832 219 ntBASIC25.66■■□□□ 1.7
USP42Q9H9J4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP42Q9H9J4 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
USP42Q9H9J4 NBPF21P-201ENST00000425093 1451 ntBASIC25.66■■□□□ 1.7
USP42Q9H9J4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP42Q9H9J4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC25.66■■□□□ 1.7
USP42Q9H9J4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
USP42Q9H9J4 KRT8P9-201ENST00000558927 1449 ntBASIC25.66■■□□□ 1.7
USP42Q9H9J4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
USP42Q9H9J4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP42Q9H9J4 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP42Q9H9J4 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 NT5C-211ENST00000582170 653 ntTSL 3 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
USP42Q9H9J4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP42Q9H9J4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
USP42Q9H9J4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 STK25-205ENST00000405883 1904 ntTSL 2 BASIC25.65■■□□□ 1.7
USP42Q9H9J4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC25.64■■□□□ 1.7
USP42Q9H9J4 RBM17P1-201ENST00000453646 1190 ntBASIC25.64■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms