Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 AC010536.3-201ENST00000620306 533 ntBASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ATG4AQ8WYN0 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 AC097381.1-201ENST00000429019 1296 ntBASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 TERF1P5-201ENST00000477545 1207 ntBASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 AL356652.1-201ENST00000615962 565 ntBASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 AC087633.2-202ENST00000565166 1439 ntBASIC20.83■□□□□ 0.93
ATG4AQ8WYN0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ATG4AQ8WYN0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.92
ATG4AQ8WYN0 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.83■□□□□ 0.92
ATG4AQ8WYN0 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 AC016405.3-201ENST00000607710 860 ntBASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
ATG4AQ8WYN0 CYP21A1P-202ENST00000354927 1481 ntBASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.81■□□□□ 0.92
ATG4AQ8WYN0 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.8■□□□□ 0.92
ATG4AQ8WYN0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms