Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
USP48Q86UV5 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP48Q86UV5 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
USP48Q86UV5 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
USP48Q86UV5 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP48Q86UV5 CYP21A1P-202ENST00000354927 1481 ntBASIC24.65■■□□□ 1.54
USP48Q86UV5 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC24.65■■□□□ 1.54
USP48Q86UV5 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
USP48Q86UV5 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP48Q86UV5 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP48Q86UV5 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC24.65■■□□□ 1.54
USP48Q86UV5 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP48Q86UV5 AC239809.2-201ENST00000415381 517 ntBASIC24.65■■□□□ 1.54
USP48Q86UV5 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
USP48Q86UV5 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP48Q86UV5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP48Q86UV5 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
USP48Q86UV5 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
USP48Q86UV5 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC24.65■■□□□ 1.54
USP48Q86UV5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
USP48Q86UV5 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC24.64■■□□□ 1.54
USP48Q86UV5 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
USP48Q86UV5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
USP48Q86UV5 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
USP48Q86UV5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC24.64■■□□□ 1.54
USP48Q86UV5 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.54
USP48Q86UV5 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
USP48Q86UV5 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC24.64■■□□□ 1.54
USP48Q86UV5 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC24.64■■□□□ 1.54
USP48Q86UV5 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC24.64■■□□□ 1.54
USP48Q86UV5 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
USP48Q86UV5 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC24.64■■□□□ 1.54
USP48Q86UV5 AC110285.5-201ENST00000611501 352 ntBASIC24.64■■□□□ 1.54
USP48Q86UV5 SNX21-213ENST00000614929 587 ntTSL 5 BASIC24.64■■□□□ 1.54
USP48Q86UV5 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
USP48Q86UV5 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
USP48Q86UV5 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
USP48Q86UV5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC24.64■■□□□ 1.53
USP48Q86UV5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
USP48Q86UV5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC24.64■■□□□ 1.53
USP48Q86UV5 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP48Q86UV5 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP48Q86UV5 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
USP48Q86UV5 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC24.63■■□□□ 1.53
USP48Q86UV5 AL135905.2-201ENST00000584934 1404 ntBASIC24.63■■□□□ 1.53
USP48Q86UV5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC24.63■■□□□ 1.53
USP48Q86UV5 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP48Q86UV5 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
USP48Q86UV5 KRASP1-201ENST00000407852 552 ntBASIC24.63■■□□□ 1.53
USP48Q86UV5 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC24.63■■□□□ 1.53
USP48Q86UV5 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC24.63■■□□□ 1.53
USP48Q86UV5 AC105020.6-201ENST00000621523 1217 ntBASIC24.63■■□□□ 1.53
USP48Q86UV5 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP48Q86UV5 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP48Q86UV5 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
USP48Q86UV5 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
USP48Q86UV5 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC24.63■■□□□ 1.53
USP48Q86UV5 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
USP48Q86UV5 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 TMPOP1-202ENST00000424642 1267 ntBASIC24.62■■□□□ 1.53
USP48Q86UV5 KRT18P35-201ENST00000510488 1269 ntBASIC24.62■■□□□ 1.53
USP48Q86UV5 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC24.62■■□□□ 1.53
USP48Q86UV5 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
USP48Q86UV5 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC24.62■■□□□ 1.53
USP48Q86UV5 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
USP48Q86UV5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC24.62■■□□□ 1.53
USP48Q86UV5 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
USP48Q86UV5 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC24.61■■□□□ 1.53
USP48Q86UV5 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP48Q86UV5 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP48Q86UV5 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USP48Q86UV5 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC24.61■■□□□ 1.53
USP48Q86UV5 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
USP48Q86UV5 PRKY-204ENST00000533551 1019 ntBASIC24.61■■□□□ 1.53
USP48Q86UV5 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC24.61■■□□□ 1.53
USP48Q86UV5 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC24.61■■□□□ 1.53
USP48Q86UV5 AC120498.8-201ENST00000614275 531 ntBASIC24.61■■□□□ 1.53
USP48Q86UV5 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP48Q86UV5 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
USP48Q86UV5 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
USP48Q86UV5 LINC01521-201ENST00000504184 1943 ntBASIC24.61■■□□□ 1.53
USP48Q86UV5 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC24.61■■□□□ 1.53
USP48Q86UV5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
USP48Q86UV5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
USP48Q86UV5 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC24.6■■□□□ 1.53
USP48Q86UV5 ARMC10P1-201ENST00000313754 855 ntBASIC24.6■■□□□ 1.53
USP48Q86UV5 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC24.6■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms