Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 KRT18P10-201ENST00000388836 1287 ntBASIC12.62□□□□□ -0.39
LINC00643Q86TS7 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
LINC00643Q86TS7 AL391121.1-201ENST00000607967 1349 ntBASIC12.62□□□□□ -0.39
LINC00643Q86TS7 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 LBX2-AS1-202ENST00000603175 2083 ntBASIC12.61□□□□□ -0.39
LINC00643Q86TS7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 AC148477.6-201ENST00000623746 465 ntBASIC12.61□□□□□ -0.39
LINC00643Q86TS7 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC12.61□□□□□ -0.39
LINC00643Q86TS7 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00643Q86TS7 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 AC121338.2-201ENST00000622535 1744 ntBASIC12.59□□□□□ -0.39
LINC00643Q86TS7 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 FST-202ENST00000396947 2538 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
LINC00643Q86TS7 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms