Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 AC026271.3-201ENST00000571884 352 ntBASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC13.64□□□□□ -0.23
VPS13DQ5THJ4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 AL445675.2-201ENST00000620291 557 ntBASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 PTBP1P-201ENST00000554374 1601 ntBASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 MIR1238-201ENST00000408483 83 ntBASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13DQ5THJ4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 AP005242.2-201ENST00000580065 1175 ntBASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 AC005363.2-201ENST00000618631 242 ntBASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 B3GAT3P1-201ENST00000471720 806 ntBASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 DUX4L26-201ENST00000489078 1255 ntBASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 AL121603.2-201ENST00000557373 2117 ntBASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13DQ5THJ4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC13.61□□□□□ -0.23
VPS13DQ5THJ4 MIR2861-201ENST00000636310 90 ntBASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms