Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 AC091304.2-201ENST00000564639 760 ntBASIC11.13□□□□□ -0.63
UBR4Q5T4S7 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 SPEG-225ENST00000617028 815 ntTSL 5 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
UBR4Q5T4S7 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 RER1-204ENST00000378518 522 ntTSL 3 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 PENK-208ENST00000523051 772 ntTSL 5 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 AC091799.1-201ENST00000422823 811 ntBASIC11.12□□□□□ -0.63
UBR4Q5T4S7 AC245052.3-201ENST00000450182 901 ntBASIC11.12□□□□□ -0.63
UBR4Q5T4S7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 AC104819.1-201ENST00000504587 486 ntBASIC11.12□□□□□ -0.63
UBR4Q5T4S7 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 VPS51-217ENST00000639871 243 ntTSL 5 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 FABP5-202ENST00000396359 986 ntTSL 5 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 METTL26-205ENST00000397666 726 ntTSL 2 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 B3GAT3P1-201ENST00000471720 806 ntBASIC11.12□□□□□ -0.63
UBR4Q5T4S7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC11.12□□□□□ -0.63
UBR4Q5T4S7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 MIR1199-201ENST00000621445 119 ntBASIC11.11□□□□□ -0.63
UBR4Q5T4S7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 KRT16P1-201ENST00000399124 1418 ntBASIC11.11□□□□□ -0.63
UBR4Q5T4S7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 SPDYE13P-201ENST00000445314 798 ntBASIC11.11□□□□□ -0.63
UBR4Q5T4S7 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 CA15P1-201ENST00000481698 905 ntBASIC11.11□□□□□ -0.63
UBR4Q5T4S7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 FSCN1P1-201ENST00000568912 1481 ntBASIC11.11□□□□□ -0.63
UBR4Q5T4S7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
UBR4Q5T4S7 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC11.1□□□□□ -0.63
UBR4Q5T4S7 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
UBR4Q5T4S7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC11.1□□□□□ -0.63
UBR4Q5T4S7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC11.1□□□□□ -0.63
UBR4Q5T4S7 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC11.1□□□□□ -0.63
UBR4Q5T4S7 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC11.1□□□□□ -0.63
UBR4Q5T4S7 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC11.1□□□□□ -0.63
UBR4Q5T4S7 AC092338.2-201ENST00000568827 1415 ntBASIC11.1□□□□□ -0.63
UBR4Q5T4S7 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC11.1□□□□□ -0.63
UBR4Q5T4S7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms