Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.67■□□□□ 0.58
RFX4Q33E94 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RFX4Q33E94 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFX4Q33E94 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFX4Q33E94 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.66■□□□□ 0.58
RFX4Q33E94 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFX4Q33E94 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
RFX4Q33E94 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
RFX4Q33E94 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.66■□□□□ 0.58
RFX4Q33E94 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.66■□□□□ 0.58
RFX4Q33E94 SUDS3P1-201ENST00000505831 966 ntBASIC18.66■□□□□ 0.58
RFX4Q33E94 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFX4Q33E94 MIR2861-201ENST00000636310 90 ntBASIC18.66■□□□□ 0.58
RFX4Q33E94 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RFX4Q33E94 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFX4Q33E94 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RFX4Q33E94 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.66■□□□□ 0.58
RFX4Q33E94 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.66■□□□□ 0.58
RFX4Q33E94 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
RFX4Q33E94 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.65■□□□□ 0.58
RFX4Q33E94 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.65■□□□□ 0.58
RFX4Q33E94 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
RFX4Q33E94 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.65■□□□□ 0.58
RFX4Q33E94 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 POU5F1P4-201ENST00000413175 1085 ntBASIC18.65■□□□□ 0.58
RFX4Q33E94 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 AC008175.2-201ENST00000612840 297 ntBASIC18.65■□□□□ 0.58
RFX4Q33E94 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.65■□□□□ 0.58
RFX4Q33E94 AL358852.1-201ENST00000623174 1268 ntBASIC18.65■□□□□ 0.58
RFX4Q33E94 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.65■□□□□ 0.58
RFX4Q33E94 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
RFX4Q33E94 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.65■□□□□ 0.58
RFX4Q33E94 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RFX4Q33E94 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
RFX4Q33E94 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.64■□□□□ 0.58
RFX4Q33E94 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RFX4Q33E94 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RFX4Q33E94 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
RFX4Q33E94 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.64■□□□□ 0.57
RFX4Q33E94 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RFX4Q33E94 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.64■□□□□ 0.57
RFX4Q33E94 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC18.64■□□□□ 0.57
RFX4Q33E94 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.64■□□□□ 0.57
RFX4Q33E94 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
RFX4Q33E94 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
RFX4Q33E94 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RFX4Q33E94 AC093484.2-201ENST00000580996 2166 ntBASIC18.64■□□□□ 0.57
RFX4Q33E94 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RFX4Q33E94 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.63■□□□□ 0.57
RFX4Q33E94 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RFX4Q33E94 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RFX4Q33E94 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms