Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PRKDCP78527 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC14.72□□□□□ -0.05
PRKDCP78527 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC14.72□□□□□ -0.05
PRKDCP78527 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PRKDCP78527 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC14.71□□□□□ -0.05
PRKDCP78527 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PRKDCP78527 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PRKDCP78527 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC14.71□□□□□ -0.05
PRKDCP78527 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC14.71□□□□□ -0.05
PRKDCP78527 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.71□□□□□ -0.05
PRKDCP78527 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
PRKDCP78527 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
PRKDCP78527 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PRKDCP78527 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PRKDCP78527 AC139530.1-201ENST00000575312 1977 ntBASIC14.71□□□□□ -0.05
PRKDCP78527 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PRKDCP78527 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PRKDCP78527 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PRKDCP78527 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC14.71□□□□□ -0.05
PRKDCP78527 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PRKDCP78527 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
PRKDCP78527 FSCN1P1-201ENST00000568912 1481 ntBASIC14.71□□□□□ -0.05
PRKDCP78527 FDX2-206ENST00000492239 773 ntTSL 2 BASIC14.71□□□□□ -0.06
PRKDCP78527 AC111152.3-201ENST00000569699 673 ntBASIC14.71□□□□□ -0.06
PRKDCP78527 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.06
PRKDCP78527 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC14.7□□□□□ -0.06
PRKDCP78527 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
PRKDCP78527 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.7□□□□□ -0.06
PRKDCP78527 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.7□□□□□ -0.06
PRKDCP78527 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
PRKDCP78527 DFFB-212ENST00000625756 649 ntTSL 5 BASIC14.7□□□□□ -0.06
PRKDCP78527 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14.7□□□□□ -0.06
PRKDCP78527 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
PRKDCP78527 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC14.7□□□□□ -0.06
PRKDCP78527 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC14.7□□□□□ -0.06
PRKDCP78527 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC14.7□□□□□ -0.06
PRKDCP78527 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC14.7□□□□□ -0.06
PRKDCP78527 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC14.7□□□□□ -0.06
PRKDCP78527 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.7□□□□□ -0.06
PRKDCP78527 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PRKDCP78527 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
PRKDCP78527 STK25-205ENST00000405883 1904 ntTSL 2 BASIC14.7□□□□□ -0.06
PRKDCP78527 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
PRKDCP78527 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.69□□□□□ -0.06
PRKDCP78527 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.69□□□□□ -0.06
PRKDCP78527 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PRKDCP78527 KRT18P38-201ENST00000449496 1282 ntBASIC14.69□□□□□ -0.06
PRKDCP78527 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.69□□□□□ -0.06
PRKDCP78527 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC14.69□□□□□ -0.06
PRKDCP78527 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 KSR1P1-201ENST00000446298 240 ntBASIC14.69□□□□□ -0.06
PRKDCP78527 CKBP1-201ENST00000565489 1086 ntBASIC14.69□□□□□ -0.06
PRKDCP78527 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
PRKDCP78527 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC14.69□□□□□ -0.06
PRKDCP78527 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PRKDCP78527 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC14.69□□□□□ -0.06
PRKDCP78527 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC14.68□□□□□ -0.06
PRKDCP78527 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC14.68□□□□□ -0.06
PRKDCP78527 AC092183.1-201ENST00000469884 875 ntBASIC14.68□□□□□ -0.06
PRKDCP78527 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC14.68□□□□□ -0.06
PRKDCP78527 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC14.68□□□□□ -0.06
PRKDCP78527 VENTXP5-201ENST00000523979 775 ntBASIC14.68□□□□□ -0.06
PRKDCP78527 GRAMD4P8-201ENST00000605465 1115 ntBASIC14.68□□□□□ -0.06
PRKDCP78527 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PRKDCP78527 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC14.68□□□□□ -0.06
PRKDCP78527 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PRKDCP78527 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PRKDCP78527 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC14.68□□□□□ -0.06
PRKDCP78527 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
PRKDCP78527 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PRKDCP78527 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
PRKDCP78527 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PRKDCP78527 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PRKDCP78527 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PRKDCP78527 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PRKDCP78527 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
PRKDCP78527 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC14.68□□□□□ -0.06
PRKDCP78527 MIR3180-1-201ENST00000580374 94 ntBASIC14.68□□□□□ -0.06
PRKDCP78527 MIR3180-3-201ENST00000584616 94 ntBASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms