Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMK1P53667 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
LIMK1P53667 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMK1P53667 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMK1P53667 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.94■□□□□ 0.78
LIMK1P53667 NUDT16P1-203ENST00000513809 620 ntBASIC19.94■□□□□ 0.78
LIMK1P53667 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMK1P53667 AC087388.1-201ENST00000571370 1112 ntBASIC19.94■□□□□ 0.78
LIMK1P53667 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMK1P53667 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.94■□□□□ 0.78
LIMK1P53667 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.94■□□□□ 0.78
LIMK1P53667 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.94■□□□□ 0.78
LIMK1P53667 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMK1P53667 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIMK1P53667 AL121603.2-201ENST00000557373 2117 ntBASIC19.93■□□□□ 0.78
LIMK1P53667 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMK1P53667 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMK1P53667 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMK1P53667 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
LIMK1P53667 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LIMK1P53667 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.93■□□□□ 0.78
LIMK1P53667 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.93■□□□□ 0.78
LIMK1P53667 NAPSB-206ENST00000562112 1266 ntBASIC19.93■□□□□ 0.78
LIMK1P53667 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.93■□□□□ 0.78
LIMK1P53667 AL031963.3-201ENST00000606441 850 ntBASIC19.93■□□□□ 0.78
LIMK1P53667 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.93■□□□□ 0.78
LIMK1P53667 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
LIMK1P53667 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
LIMK1P53667 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMK1P53667 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIMK1P53667 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMK1P53667 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIMK1P53667 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.92■□□□□ 0.78
LIMK1P53667 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
LIMK1P53667 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
LIMK1P53667 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMK1P53667 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMK1P53667 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMK1P53667 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.92■□□□□ 0.78
LIMK1P53667 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMK1P53667 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.92■□□□□ 0.78
LIMK1P53667 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMK1P53667 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.92■□□□□ 0.78
LIMK1P53667 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMK1P53667 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMK1P53667 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
LIMK1P53667 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMK1P53667 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMK1P53667 SLC25A3P1-201ENST00000443844 931 ntBASIC19.91■□□□□ 0.78
LIMK1P53667 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMK1P53667 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMK1P53667 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMK1P53667 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.91■□□□□ 0.78
LIMK1P53667 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.91■□□□□ 0.78
LIMK1P53667 AP000525.1-201ENST00000608286 694 ntBASIC19.91■□□□□ 0.78
LIMK1P53667 AL121829.2-201ENST00000620908 328 ntBASIC19.91■□□□□ 0.78
LIMK1P53667 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMK1P53667 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMK1P53667 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMK1P53667 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
LIMK1P53667 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMK1P53667 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMK1P53667 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMK1P53667 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMK1P53667 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMK1P53667 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 AC080038.3-201ENST00000623346 1952 ntBASIC19.9■□□□□ 0.78
LIMK1P53667 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMK1P53667 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 MIR1238-201ENST00000408483 83 ntBASIC19.9■□□□□ 0.78
LIMK1P53667 PGM5P4-201ENST00000421970 445 ntBASIC19.9■□□□□ 0.78
LIMK1P53667 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMK1P53667 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.9■□□□□ 0.78
LIMK1P53667 REXO1L10P-201ENST00000615707 1290 ntBASIC19.9■□□□□ 0.78
LIMK1P53667 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.9■□□□□ 0.78
LIMK1P53667 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMK1P53667 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LIMK1P53667 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMK1P53667 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMK1P53667 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMK1P53667 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMK1P53667 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms