Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 C2orf69P4-201ENST00000565394 541 ntBASIC21.07■□□□□ 0.96
APOEP02649 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.07■□□□□ 0.96
APOEP02649 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.07■□□□□ 0.96
APOEP02649 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.07■□□□□ 0.96
APOEP02649 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.07■□□□□ 0.96
APOEP02649 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 AC092667.1-201ENST00000434301 2586 ntBASIC21.07■□□□□ 0.96
APOEP02649 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
APOEP02649 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
APOEP02649 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 AC007225.1-201ENST00000566331 1836 ntBASIC21.06■□□□□ 0.96
APOEP02649 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.06■□□□□ 0.96
APOEP02649 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.06■□□□□ 0.96
APOEP02649 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.06■□□□□ 0.96
APOEP02649 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.06■□□□□ 0.96
APOEP02649 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.06■□□□□ 0.96
APOEP02649 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 AP005212.1-201ENST00000581547 1997 ntBASIC21.06■□□□□ 0.96
APOEP02649 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
APOEP02649 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
APOEP02649 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.05■□□□□ 0.96
APOEP02649 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
APOEP02649 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
APOEP02649 GABARAPL3-202ENST00000624044 1851 ntBASIC21.05■□□□□ 0.96
APOEP02649 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
APOEP02649 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
APOEP02649 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
APOEP02649 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
APOEP02649 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
APOEP02649 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.05■□□□□ 0.96
APOEP02649 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.05■□□□□ 0.96
APOEP02649 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.05■□□□□ 0.96
APOEP02649 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
APOEP02649 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.05■□□□□ 0.96
APOEP02649 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
APOEP02649 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
APOEP02649 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
APOEP02649 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.04■□□□□ 0.96
APOEP02649 AC073314.1-201ENST00000568729 2216 ntBASIC21.04■□□□□ 0.96
APOEP02649 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
APOEP02649 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
APOEP02649 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.04■□□□□ 0.96
APOEP02649 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
APOEP02649 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
APOEP02649 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
APOEP02649 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
APOEP02649 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
APOEP02649 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.04■□□□□ 0.96
APOEP02649 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
APOEP02649 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.04■□□□□ 0.96
APOEP02649 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
APOEP02649 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.03■□□□□ 0.96
APOEP02649 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
APOEP02649 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.03■□□□□ 0.96
APOEP02649 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.03■□□□□ 0.96
APOEP02649 CD99P1-205ENST00000527459 561 ntBASIC21.03■□□□□ 0.96
APOEP02649 AL121603.2-201ENST00000557373 2117 ntBASIC21.03■□□□□ 0.96
APOEP02649 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.03■□□□□ 0.96
APOEP02649 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.03■□□□□ 0.96
APOEP02649 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
APOEP02649 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
APOEP02649 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
APOEP02649 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
APOEP02649 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
APOEP02649 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
APOEP02649 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.02■□□□□ 0.96
APOEP02649 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
APOEP02649 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.02■□□□□ 0.96
APOEP02649 RNA5SP413-201ENST00000516373 109 ntBASIC21.02■□□□□ 0.96
APOEP02649 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.02■□□□□ 0.96
APOEP02649 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.02■□□□□ 0.96
APOEP02649 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
APOEP02649 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
APOEP02649 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
APOEP02649 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
APOEP02649 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms