Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
SIX3O95343 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX3O95343 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SIX3O95343 BX119927.1-201ENST00000636596 1552 ntBASIC19.67■□□□□ 0.74
SIX3O95343 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SIX3O95343 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX3O95343 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.67■□□□□ 0.74
SIX3O95343 AC026271.2-201ENST00000428091 497 ntBASIC19.67■□□□□ 0.74
SIX3O95343 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.67■□□□□ 0.74
SIX3O95343 KRT18P11-201ENST00000435214 1283 ntBASIC19.67■□□□□ 0.74
SIX3O95343 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SIX3O95343 AC007322.4-201ENST00000509611 723 ntBASIC19.67■□□□□ 0.74
SIX3O95343 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX3O95343 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.67■□□□□ 0.74
SIX3O95343 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.67■□□□□ 0.74
SIX3O95343 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.67■□□□□ 0.74
SIX3O95343 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX3O95343 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX3O95343 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SIX3O95343 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SIX3O95343 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
SIX3O95343 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 AL158211.5-201ENST00000623583 2518 ntBASIC19.66■□□□□ 0.74
SIX3O95343 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SIX3O95343 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SIX3O95343 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.66■□□□□ 0.74
SIX3O95343 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.66■□□□□ 0.74
SIX3O95343 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.66■□□□□ 0.74
SIX3O95343 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.66■□□□□ 0.74
SIX3O95343 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.66■□□□□ 0.74
SIX3O95343 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX3O95343 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
SIX3O95343 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX3O95343 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.66■□□□□ 0.74
SIX3O95343 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.66■□□□□ 0.74
SIX3O95343 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX3O95343 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SIX3O95343 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SIX3O95343 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
SIX3O95343 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.65■□□□□ 0.74
SIX3O95343 PGM5P4-201ENST00000421970 445 ntBASIC19.65■□□□□ 0.74
SIX3O95343 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.65■□□□□ 0.74
SIX3O95343 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 AC011767.1-201ENST00000617410 1153 ntBASIC19.65■□□□□ 0.74
SIX3O95343 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.65■□□□□ 0.74
SIX3O95343 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.65■□□□□ 0.74
SIX3O95343 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SIX3O95343 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX3O95343 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.65■□□□□ 0.74
SIX3O95343 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SIX3O95343 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
SIX3O95343 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.64■□□□□ 0.74
SIX3O95343 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SIX3O95343 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SIX3O95343 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX3O95343 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX3O95343 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX3O95343 CNN2P6-201ENST00000439038 900 ntBASIC19.64■□□□□ 0.73
SIX3O95343 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SIX3O95343 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX3O95343 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX3O95343 AL162412.1-201ENST00000567129 965 ntBASIC19.64■□□□□ 0.73
SIX3O95343 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.64■□□□□ 0.73
SIX3O95343 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SIX3O95343 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.64■□□□□ 0.73
SIX3O95343 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SIX3O95343 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX3O95343 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SIX3O95343 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX3O95343 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX3O95343 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX3O95343 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX3O95343 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX3O95343 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX3O95343 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SIX3O95343 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX3O95343 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX3O95343 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SIX3O95343 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms