Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SHOX2O60902 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SHOX2O60902 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHOX2O60902 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
SHOX2O60902 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHOX2O60902 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SHOX2O60902 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.17■□□□□ 0.82
SHOX2O60902 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
SHOX2O60902 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.17■□□□□ 0.82
SHOX2O60902 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SHOX2O60902 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.17■□□□□ 0.82
SHOX2O60902 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.16■□□□□ 0.82
SHOX2O60902 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.16■□□□□ 0.82
SHOX2O60902 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.16■□□□□ 0.82
SHOX2O60902 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHOX2O60902 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.16■□□□□ 0.82
SHOX2O60902 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHOX2O60902 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHOX2O60902 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SHOX2O60902 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHOX2O60902 RARRES2P1-201ENST00000474487 481 ntBASIC20.16■□□□□ 0.82
SHOX2O60902 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHOX2O60902 MIR2861-201ENST00000636310 90 ntBASIC20.16■□□□□ 0.82
SHOX2O60902 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
SHOX2O60902 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
SHOX2O60902 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SHOX2O60902 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHOX2O60902 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
SHOX2O60902 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SHOX2O60902 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SHOX2O60902 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.15■□□□□ 0.82
SHOX2O60902 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
SHOX2O60902 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
SHOX2O60902 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHOX2O60902 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.15■□□□□ 0.82
SHOX2O60902 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.15■□□□□ 0.82
SHOX2O60902 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SHOX2O60902 AC010525.1-201ENST00000585559 441 ntBASIC20.15■□□□□ 0.82
SHOX2O60902 AC010997.5-201ENST00000609182 354 ntBASIC20.15■□□□□ 0.82
SHOX2O60902 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.15■□□□□ 0.82
SHOX2O60902 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHOX2O60902 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHOX2O60902 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHOX2O60902 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.15■□□□□ 0.82
SHOX2O60902 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.15■□□□□ 0.82
SHOX2O60902 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHOX2O60902 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHOX2O60902 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHOX2O60902 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.15■□□□□ 0.82
SHOX2O60902 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SHOX2O60902 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC20.15■□□□□ 0.82
SHOX2O60902 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SHOX2O60902 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
SHOX2O60902 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.14■□□□□ 0.82
SHOX2O60902 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
SHOX2O60902 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
SHOX2O60902 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SHOX2O60902 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SHOX2O60902 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
SHOX2O60902 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHOX2O60902 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SHOX2O60902 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SHOX2O60902 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SHOX2O60902 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.14■□□□□ 0.81
SHOX2O60902 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHOX2O60902 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.14■□□□□ 0.81
SHOX2O60902 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.14■□□□□ 0.81
SHOX2O60902 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHOX2O60902 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHOX2O60902 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHOX2O60902 AC068880.1-201ENST00000507289 2297 ntBASIC20.14■□□□□ 0.81
SHOX2O60902 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SHOX2O60902 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SHOX2O60902 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SHOX2O60902 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SHOX2O60902 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.13■□□□□ 0.81
SHOX2O60902 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
SHOX2O60902 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.13■□□□□ 0.81
SHOX2O60902 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.13■□□□□ 0.81
SHOX2O60902 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 AL354751.1-201ENST00000412768 1863 ntBASIC20.13■□□□□ 0.81
SHOX2O60902 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
SHOX2O60902 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHOX2O60902 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
SHOX2O60902 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHOX2O60902 BICD1-207ENST00000551848 1962 ntBASIC20.12■□□□□ 0.81
SHOX2O60902 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms