Protein–RNA interactions for Protein: A2RUB6

CCDC66, Coiled-coil domain-containing protein 66, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66A2RUB6 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC66A2RUB6 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC66A2RUB6 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 SUDS3P1-201ENST00000505831 966 ntBASIC21.68■■□□□ 1.06
CCDC66A2RUB6 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC66A2RUB6 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 FP700111.2-201ENST00000619190 1892 ntBASIC21.67■■□□□ 1.06
CCDC66A2RUB6 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.67■■□□□ 1.06
CCDC66A2RUB6 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 AL358852.1-201ENST00000623174 1268 ntBASIC21.67■■□□□ 1.06
CCDC66A2RUB6 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC66A2RUB6 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 MIR638-201ENST00000385237 100 ntBASIC21.66■■□□□ 1.06
CCDC66A2RUB6 POU5F1P4-201ENST00000413175 1085 ntBASIC21.66■■□□□ 1.06
CCDC66A2RUB6 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 AC008175.2-201ENST00000612840 297 ntBASIC21.66■■□□□ 1.06
CCDC66A2RUB6 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC66A2RUB6 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC66A2RUB6 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC66A2RUB6 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.64■■□□□ 1.06
CCDC66A2RUB6 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC66A2RUB6 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC66A2RUB6 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC66A2RUB6 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC66A2RUB6 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC66A2RUB6 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC66A2RUB6 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms