Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 BX276092.2-201ENST00000417668 665 ntBASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 AC099778.1-201ENST00000568593 1911 ntBASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 AL391422.3-201ENST00000603791 2761 ntBASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
AP4E1Q9UPM8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 LSM12P1-201ENST00000411836 588 ntBASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 NCF1B-203ENST00000435988 1254 ntBASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.94■□□□□ 0.94
AP4E1Q9UPM8 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
AP4E1Q9UPM8 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 GPX1P1-201ENST00000388829 606 ntBASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 AC090192.1-201ENST00000517740 490 ntBASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.92■□□□□ 0.94
AP4E1Q9UPM8 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 GUSBP6-202ENST00000438529 1198 ntBASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
AP4E1Q9UPM8 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 SLC29A4P1-201ENST00000398760 971 ntBASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 MIPEPP3-201ENST00000412105 444 ntBASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 TSPY6P-201ENST00000448518 926 ntBASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.9■□□□□ 0.94
AP4E1Q9UPM8 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms