Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 AC138907.5-202ENST00000569484 235 ntBASIC19.44■□□□□ 0.7
VPS4AQ9UN37 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 MKRN4P-201ENST00000444706 1521 ntBASIC19.44■□□□□ 0.7
VPS4AQ9UN37 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS4AQ9UN37 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 KRT16P2-201ENST00000414673 1423 ntBASIC19.43■□□□□ 0.7
VPS4AQ9UN37 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 MIPEPP3-201ENST00000412105 444 ntBASIC19.43■□□□□ 0.7
VPS4AQ9UN37 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 DUSP5P2-201ENST00000426873 1033 ntBASIC19.43■□□□□ 0.7
VPS4AQ9UN37 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 AC245052.3-201ENST00000450182 901 ntBASIC19.43■□□□□ 0.7
VPS4AQ9UN37 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
VPS4AQ9UN37 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.42■□□□□ 0.7
VPS4AQ9UN37 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
VPS4AQ9UN37 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 KRT18P20-201ENST00000548986 1279 ntBASIC19.41■□□□□ 0.7
VPS4AQ9UN37 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 AC013268.1-206ENST00000638368 961 ntBASIC19.41■□□□□ 0.7
VPS4AQ9UN37 AC112229.1-201ENST00000639295 961 ntBASIC19.41■□□□□ 0.7
VPS4AQ9UN37 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS4AQ9UN37 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms