Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC38.52■■■■□ 3.76
SHROOM4Q9ULL8 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC38.52■■■■□ 3.76
SHROOM4Q9ULL8 RER1-204ENST00000378518 522 ntTSL 3 BASIC38.52■■■■□ 3.76
SHROOM4Q9ULL8 RPS15-203ENST00000586096 570 ntTSL 2 BASIC38.52■■■■□ 3.76
SHROOM4Q9ULL8 KRT8P9-201ENST00000558927 1449 ntBASIC38.52■■■■□ 3.76
SHROOM4Q9ULL8 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC38.52■■■■□ 3.76
SHROOM4Q9ULL8 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC38.52■■■■□ 3.76
SHROOM4Q9ULL8 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC38.51■■■■□ 3.76
SHROOM4Q9ULL8 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC38.51■■■■□ 3.76
SHROOM4Q9ULL8 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC38.51■■■■□ 3.76
SHROOM4Q9ULL8 NUDT16P1-203ENST00000513809 620 ntBASIC38.51■■■■□ 3.76
SHROOM4Q9ULL8 AL356652.1-201ENST00000615962 565 ntBASIC38.51■■■■□ 3.76
SHROOM4Q9ULL8 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC38.51■■■■□ 3.76
SHROOM4Q9ULL8 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC38.51■■■■□ 3.76
SHROOM4Q9ULL8 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC38.51■■■■□ 3.75
SHROOM4Q9ULL8 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 DUT-205ENST00000558813 769 ntTSL 2 BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 DECR2-212ENST00000627716 352 ntTSL 2 BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC38.5■■■■□ 3.75
SHROOM4Q9ULL8 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC38.49■■■■□ 3.75
SHROOM4Q9ULL8 KRT18P57-201ENST00000443599 1254 ntBASIC38.49■■■■□ 3.75
SHROOM4Q9ULL8 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC38.49■■■■□ 3.75
SHROOM4Q9ULL8 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC38.49■■■■□ 3.75
SHROOM4Q9ULL8 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC38.49■■■■□ 3.75
SHROOM4Q9ULL8 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC38.49■■■■□ 3.75
SHROOM4Q9ULL8 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC38.49■■■■□ 3.75
SHROOM4Q9ULL8 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC38.48■■■■□ 3.75
SHROOM4Q9ULL8 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC38.48■■■■□ 3.75
SHROOM4Q9ULL8 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC38.48■■■■□ 3.75
SHROOM4Q9ULL8 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC38.48■■■■□ 3.75
SHROOM4Q9ULL8 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC38.48■■■■□ 3.75
SHROOM4Q9ULL8 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC38.48■■■■□ 3.75
SHROOM4Q9ULL8 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC38.48■■■■□ 3.75
SHROOM4Q9ULL8 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC38.48■■■■□ 3.75
SHROOM4Q9ULL8 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 AL355355.2-201ENST00000442321 338 ntBASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 AC012676.1-201ENST00000574705 1949 ntBASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC38.47■■■■□ 3.75
SHROOM4Q9ULL8 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC38.46■■■■□ 3.75
SHROOM4Q9ULL8 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC38.46■■■■□ 3.75
SHROOM4Q9ULL8 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC38.46■■■■□ 3.75
SHROOM4Q9ULL8 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC38.46■■■■□ 3.75
SHROOM4Q9ULL8 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC38.45■■■■□ 3.75
SHROOM4Q9ULL8 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC38.45■■■■□ 3.75
SHROOM4Q9ULL8 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC38.45■■■■□ 3.75
SHROOM4Q9ULL8 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC38.45■■■■□ 3.75
SHROOM4Q9ULL8 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC38.45■■■■□ 3.75
SHROOM4Q9ULL8 DUX4L26-201ENST00000489078 1255 ntBASIC38.45■■■■□ 3.75
SHROOM4Q9ULL8 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC38.45■■■■□ 3.75
SHROOM4Q9ULL8 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC38.45■■■■□ 3.75
SHROOM4Q9ULL8 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC38.45■■■■□ 3.75
SHROOM4Q9ULL8 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC38.44■■■■□ 3.74
SHROOM4Q9ULL8 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC38.44■■■■□ 3.74
SHROOM4Q9ULL8 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC38.44■■■■□ 3.74
SHROOM4Q9ULL8 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC38.44■■■■□ 3.74
SHROOM4Q9ULL8 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC38.44■■■■□ 3.74
SHROOM4Q9ULL8 AC006557.6-201ENST00000623071 864 ntBASIC38.44■■■■□ 3.74
SHROOM4Q9ULL8 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC38.44■■■■□ 3.74
SHROOM4Q9ULL8 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC38.44■■■■□ 3.74
SHROOM4Q9ULL8 AC079598.2-202ENST00000546624 1451 ntBASIC38.44■■■■□ 3.74
SHROOM4Q9ULL8 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC38.43■■■■□ 3.74
SHROOM4Q9ULL8 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC38.43■■■■□ 3.74
SHROOM4Q9ULL8 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC38.43■■■■□ 3.74
SHROOM4Q9ULL8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC38.43■■■■□ 3.74
SHROOM4Q9ULL8 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC38.43■■■■□ 3.74
SHROOM4Q9ULL8 SLC25A3P1-201ENST00000443844 931 ntBASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 KRT16P5-201ENST00000455284 522 ntBASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 STK25-205ENST00000405883 1904 ntTSL 2 BASIC38.42■■■■□ 3.74
SHROOM4Q9ULL8 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
SHROOM4Q9ULL8 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms