Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 TSPY7P-201ENST00000431358 1114 ntBASIC20.85■□□□□ 0.93
TDP1Q9NUW8 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TDP1Q9NUW8 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 AC124283.5-201ENST00000624661 1809 ntBASIC20.84■□□□□ 0.93
TDP1Q9NUW8 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TDP1Q9NUW8 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
TDP1Q9NUW8 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TDP1Q9NUW8 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TDP1Q9NUW8 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.83■□□□□ 0.93
TDP1Q9NUW8 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.83■□□□□ 0.93
TDP1Q9NUW8 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
TDP1Q9NUW8 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TDP1Q9NUW8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
TDP1Q9NUW8 REXO1L12P-201ENST00000622156 912 ntBASIC20.83■□□□□ 0.93
TDP1Q9NUW8 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TDP1Q9NUW8 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TDP1Q9NUW8 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TDP1Q9NUW8 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.83■□□□□ 0.92
TDP1Q9NUW8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TDP1Q9NUW8 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.82■□□□□ 0.92
TDP1Q9NUW8 AC113410.3-201ENST00000623366 203 ntBASIC20.82■□□□□ 0.92
TDP1Q9NUW8 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TDP1Q9NUW8 PLK5-205ENST00000642079 1969 ntBASIC20.82■□□□□ 0.92
TDP1Q9NUW8 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 HLA-G-202ENST00000376815 851 ntBASIC20.81■□□□□ 0.92
TDP1Q9NUW8 HLA-G-203ENST00000376818 1127 ntBASIC20.81■□□□□ 0.92
TDP1Q9NUW8 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 AL121906.2-201ENST00000621597 723 ntBASIC20.81■□□□□ 0.92
TDP1Q9NUW8 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TDP1Q9NUW8 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.8■□□□□ 0.92
TDP1Q9NUW8 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TDP1Q9NUW8 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TDP1Q9NUW8 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.8■□□□□ 0.92
TDP1Q9NUW8 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TDP1Q9NUW8 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TDP1Q9NUW8 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TDP1Q9NUW8 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms